WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000251166    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000251166 (Len=925)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000251166, Len=925):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNRFRVSKFRHTEARPPRRESWISDIRAGTAPSCRNHIKSSCSLIAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHSDLV 80  
WD40-rpts                                                                    (_________________

Query       81 TDLDFSPFDDFLLATGSADRTVKLWRLPGPGQALPSAPGVVLGPEDLPVEVLQFHPTSDGILVSAAGTTVKVWDAAKQQP 160 
WD40-rpts      __WD 1___________________)         (_________________WD 2________________)   (__

Query      161 LTELAAHGDLVQSAVWSRDGALVGTACKDKQLRIFDPRTKPRASQSTQAHENSRDSRLAWMGTWEHLVSTGFNQMREREV 240 
WD40-rpts      _______________WD 3________________)    (___________________WD 4________________

Query      241 KLWDTRFFSSALASLTLDTSLGCLVPLLDPDSGLLVLAGKGERQLYCYEVVPQQPALSPVTQCVLESVLRGAALVPRQAL 320 
WD40-rpts      ___)      (_________________WD 5________________)                            (__

Query      321 AVMSCEVLRVLQLSDTAIVPIGYHVPRKAVEFHEDLFPDTAGCVPATDPHSWWAGDNQQVQKVSLNPACRPHPSFTSCLV 400 
WD40-rpts      ________________WD 6_________________)        (__________________WD 7___________

Query      401 PPAEPLPDTAQPAVMETPVGDADASEGFSSPPSSLTSPSTPSSLGPSLSSTSGIGTSPSLRSLQSLLGPSSKFRHAQGTV 480 
WD40-rpts      _______)                                                                        

Query      481 LHRDSHITNLKGLNLTTPGESDGFCANKLRVAVPLLSSGGQVAVLELRKPGRLPDTALPTLQNGAAVTDLAWDPFDPHRL 560 
WD40-rpts        (_____________________WD 8____________________)(___________________WD 9_______

Query      561 AVAGEDARIRLWRVPAEGLEEVLTTPETVLTGHTEKICSLRFHPLAANVLASSSYDLTVRIWDLQAGADRLKLQGHQDQI 640 
WD40-rpts      ____________)          (_________________WD10_________________)   (_____________

Query      641 FSLAWSPDGQQLATVCKDGRVRVYRPRSGPEPLQEGPGPKGGRGARIVWVCDGRCLLVSGFDSQSERQLLLYEAEALAGG 720 
WD40-rpts      ____WD11________________)    (___________________WD12___________________)      (

Query      721 PLAVLGLDVAPSTLLPSYDPDTGLVLLTGKGDTRVFLYELLPESPFFLECNSFTSPDPHKGLVLLPKTECDVREVELMRC 800 
WD40-rpts      _________________WD13_________________)                                   (_____

Query      801 LRLRQSSLEPVAFRLPRVRKEFFQDDVFPDTAVIWEPVLSAEAWLQGANGQPWLLSLQPPDMSPVSQAPREAPARRAPSS 880 
WD40-rpts      _____________WD14__________________)                                            

Query      881 AQYLEEKSDQQKKEELLNAMVAKLGNREDPLPQDSFEGVDEDEWD 925 
WD40-rpts                                                   



14 WD40-repeats found in QUERY=ENSP00000251166 (Len=925):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    63-106      8.00  445.18  6.2e-05       42.5%     51.22
  WD 2:  Seg  9   116-154      7.27  414.85  0.00016       22.5%     45.21
  WD 3:  Seg 12   158-196      8.45  463.68  3.5e-05       25.0%     55.57
  WD 4:  Seg 16   201-244      4.55  302.77  0.00516       20.0%     38.30
  WD 5:  Seg 19   251-289      5.98  361.50  0.00084       10.0%     48.06
  WD 6:  Seg 26   318-358      4.50  300.61  0.00552        5.0%     14.28
  WD 7:  Seg 28   367-408      3.12  243.34  0.03224       17.5%     -2.07
  WD 8:  Seg 31   483-529      6.10  366.84  0.00071       15.0%     15.04
  WD 9:  Seg 35   530-573      7.28  415.44  0.00016       27.5%     46.79
  WD10:  Seg 38   584-623      7.39  419.93  0.00014       35.0%     51.32
  WD11:  Seg 42   627-665      9.22  495.57  1.3e-05       32.5%     56.78
  WD12:  Seg 46   670-713      4.00  280.01  0.01044       20.0%     48.23
  WD13:  Seg 50   720-759      5.25  331.44  0.00212       20.0%     53.16
  WD14:  Seg 55   795-836      2.87  233.33  0.04373       20.0%     29.49
Multiple sequence alignment of 14 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   63-106    QG---EDKRRVA-------HLGC-HSDL-VTD-LDFS---PFD-DFLLAT---G----SADR----TVKLWR
   WD 2  116-154    -S---A---PGV-------VLGP-EDLP-VEV-LQFH---P-T-SDGILV---S----AAGT----TVKVWD
   WD 3  158-196    -Q---Q---PLT-------ELAA-HGDL-VQS-AVWS---R-D-GALVGT---A----CKDK----QLRIFD
   WD 4  201-244    -P---R---ASQ-------STQA-HENS-RDSRLAWM---G-T-WEHLVS---TGFNQMRER----EVKLWD
   WD 5  251-289    -A---L---ASL-------TLDT-SLGC-LVP-LLDP---D-S-GLLVLA---G----KGER----QLYCYE
   WD 6  318-358    QA---L---AVM-------SCEVLRVLQ-LSD-TAIV---P-I-GYHVPR---K----AVEF----HEDLFP
   WD 7  367-408    -T---D---PHS-------WWAG-DNQQ-VQK-VSLN---P-A-CRPHPSFTSC----LVPP----AEPLPD
   WD 8  483-529    RD---S---HITNLKGLNLTTPG-ESDG-FCA-NKLR---V-A-VPLLSS---G----GQVA----VLELRK
   WD 9  530-573    PGRLPD---TAL-------PTLQ-NGAA-VTD-LAWD---PFD-PHRLAV---A----GEDA----RIRLWR
   WD10  584-623    -T---T---PET-------VLTG-HTEK-ICS-LRFH---PLA-ANVLAS---S----SYDL----TVRIWD
   WD11  627-665    -G---A---DRL-------KLQG-HQDQ-IFS-LAWS---P-D-GQQLAT---V----CKDG----RVRVYR
   WD12  670-713    -P---E---PLQ-------EGPG-PKGGRGAR-IVWV---C-D-GRCLLV---S----GFDSQSERQLLLYE
   WD13  720-759    -G---P---LAV-------LGLD-VAPS-TLL-PSYD---P-DTGLVLLT---G----KGDT----RVFLYE
   WD14  795-836    -V---E---LMR-------CLRL-RQSS-LEP-VAFRLPRV-R-KEFFQD---D----VFPD----TAVIWE

   WD40 Template    TG---E---CLR-------TLSG-HTSG-VTS-VSFS---P-D-GKRLVS---G----SEDG----TIKVWD


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Last modified: 09 Jan 2019