WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000251289    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000251289 (Len=432)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000251289, Len=432):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAPMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYISAWELQRKDQLQQKIMCP 80  
WD40-rpts                                 (_________________WD 1________________)   (__________

Query       81 GPVTCLTASPNGLYVLAGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSR 160 
WD40-rpts      ______WD 2________________)   (_________________WD 3________________)           

Query      161 IPAPRHVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIF 240 
WD40-rpts           (________________WD 4_______________)   (________________WD 5______________

Query      241 QVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTVALKGPVTNAAILL 320 
WD40-rpts      __)               (_________________WD 6________________)   (________________WD 

Query      321 APVSMLSSDFRPSLPLPHFNKHLLGAEHGDEPRHGGLTLRLGLHQQGSEPSYLDRTEQLQAVLCSTMEKSVLGGQDQLRV 400 
WD40-rpts      7________________)                         (__________________WD 8______________

Query      401 RVTELEDEVRNLRKINRDLFDFSTRFITRPAK 432 
WD40-rpts      ___)                            



8 WD40-repeats found in QUERY=ENSP00000251289 (Len=432):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    28-66       8.51  466.28  3.2e-05       20.0%     54.18
  WD 2:  Seg  7    70-107      7.25  414.06  0.00016       22.5%     54.60
  WD 3:  Seg 11   111-149      9.72  516.05  6.9e-06       32.5%     56.20
  WD 4:  Seg 15   166-202      7.13  409.02  0.00019       25.0%     49.60
  WD 5:  Seg 18   206-243      7.37  418.98  0.00014       22.5%     57.81
  WD 6:  Seg 22   259-297      9.36  501.47  1.1e-05       40.0%     47.07
  WD 7:  Seg 25   301-338      6.42  379.99  0.00047       15.0%     45.47
  WD 8:  Seg 29   364-404      7.51  424.69  0.00012       15.0%     51.35
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   28-66     -GA-NLLTYRGGQAGPRGL--ALLNGEYLLAAQLGKNYISAWE
   WD 2   70-107    -KD-QLQQKIMCPGPVTCL--TASPNGLYVLAGV-AESIHLWE
   WD 3  111-149    -GN-LLVILSRHYQDVSCL--QFTGDSSHFISGGKDCLVLVWS
   WD 4  166-202    ------HVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWE
   WD 5  206-243    -GE-LLLSVLFDVS-IMAV--TMDLAEHHMFCGGSEGSIFQVD
   WD 6  259-297    -QD-AGKVFKGHRNQVTCL--SVSTDGSVLLSGSHDETVRLWD
   WD 7  301-338    -KQ-CIRTVALK-GPVTNA--AILLAPVSMLSSDFRPSLPLPH
   WD 8  364-404    HQQGSEPSYLDRTEQLQAV--LCSTMEKSVLGGQDQLRVRVTE

   WD40 Template    TGE-CLRTLSGHTSGVTSV--SFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019