Input parameters:
Query = ENSP00000252725 (Len=372)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000252725, Len=372):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80
WD40-rpts (_______________WD 1_______________)(___________________WD 2___________________)
Query 81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAG 160
WD40-rpts (_________________WD 3________________) (____________________WD 4__________
Query 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 240
WD40-rpts _________) (_________________WD 5________________) (______
Query 241 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAG 320
WD40-rpts __________WD 6________________) (__________________WD 7_________________)
Query 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKSLESALKDLKIK 372
WD40-rpts
7 WD40-repeats found in QUERY=ENSP00000252725 (Len=372):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-36 7.12 408.91 0.00019 5.0% 39.89
WD 2: Seg 4 37-80 8.86 480.47 2.1e-05 25.0% 52.75
WD 3: Seg 8 86-124 7.68 431.85 9.4e-05 12.5% 54.20
WD 4: Seg 12 126-170 8.36 459.87 3.9e-05 25.0% 49.89
WD 5: Seg 16 192-230 7.95 442.99 6.7e-05 32.5% 58.46
WD 6: Seg 20 234-271 6.89 399.40 0.00026 17.5% 56.41
WD 7: Seg 24 274-314 5.28 332.89 0.00203 5.0% 11.64
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-36 -------------MAYHSFLVEPI-SCHAWNKDRTQIAICPNNHEVHIYE
WD 2 37-80 KSGAKWT-----KVHELKEHNGQV-TGIDWAPESNRIVTCGTDRNAYVWT
WD 3 86-124 -W----K-----PTLVILRINRAA-RCVRWAPNENKFAVGSGSRVISICY
WD 4 126-170 EQ----ENDWWVCKHIKKPIRSTV-LSLDWHPNNVLLAAGSCDFKCRIFS
WD 5 192-230 -G----E-----LMFESSSSCGWV-HGVCFSASGSRVAWVSHDSTVCLAD
WD 6 234-271 -K----M-----AVATLASETLPL-LALTFITDNSLVAAGH-DCFPVLFT
WD 7 274-314 AA----A-----GMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGG
WD40 Template TG----E-----CLRTLSGHTSGV-TSVSFSPDGKRLVSGSEDGTIKVWD