WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000252725    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000252725 (Len=372)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000252725, Len=372):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80  
WD40-rpts      (_______________WD 1_______________)(___________________WD 2___________________)

Query       81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAG 160 
WD40-rpts           (_________________WD 3________________) (____________________WD 4__________

Query      161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 240 
WD40-rpts      _________)                     (_________________WD 5________________)   (______

Query      241 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAG 320 
WD40-rpts      __________WD 6________________)  (__________________WD 7_________________)      

Query      321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKSLESALKDLKIK 372 
WD40-rpts                                                          



7 WD40-repeats found in QUERY=ENSP00000252725 (Len=372):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       7.12  408.91  0.00019        5.0%     39.89
  WD 2:  Seg  4    37-80       8.86  480.47  2.1e-05       25.0%     52.75
  WD 3:  Seg  8    86-124      7.68  431.85  9.4e-05       12.5%     54.20
  WD 4:  Seg 12   126-170      8.36  459.87  3.9e-05       25.0%     49.89
  WD 5:  Seg 16   192-230      7.95  442.99  6.7e-05       32.5%     58.46
  WD 6:  Seg 20   234-271      6.89  399.40  0.00026       17.5%     56.41
  WD 7:  Seg 24   274-314      5.28  332.89  0.00203        5.0%     11.64
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-36     -------------MAYHSFLVEPI-SCHAWNKDRTQIAICPNNHEVHIYE
   WD 2   37-80     KSGAKWT-----KVHELKEHNGQV-TGIDWAPESNRIVTCGTDRNAYVWT
   WD 3   86-124    -W----K-----PTLVILRINRAA-RCVRWAPNENKFAVGSGSRVISICY
   WD 4  126-170    EQ----ENDWWVCKHIKKPIRSTV-LSLDWHPNNVLLAAGSCDFKCRIFS
   WD 5  192-230    -G----E-----LMFESSSSCGWV-HGVCFSASGSRVAWVSHDSTVCLAD
   WD 6  234-271    -K----M-----AVATLASETLPL-LALTFITDNSLVAAGH-DCFPVLFT
   WD 7  274-314    AA----A-----GMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGG

   WD40 Template    TG----E-----CLRTLSGHTSGV-TSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019