WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000254442 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000254442 (Len=1490) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000254442, Len=1490): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAGNSLVLPIVLWGRKAPTHCISAVLLTDDGATIVTGCHDGQICLWDLSVELQINPRALLFGHTASITCLSKACASSDKQ 80
WD40-rpts (_________________WD 1_________________)(_____________________WD 2_______
Query 81 YIVSASESGEMCLWDVSDGRCIEFTKLACTHTGIQFYQFSVGNQREGRLLCHGHYPEILVVDATSLEVLYSLVSKISPDW 160
WD40-rpts ______________) (_______________WD 3_______________) (______________
Query 161 ISSMSIIRSHRTQEDTVVALSVTGILKVWIVTSEISDMQDTEPIFEEESKPIYCQNCQSISFCAFTQRSLLVVCSKYWRV 240
WD40-rpts ______WD 4___________________) (____________________WD 5__________________
Query 241 FDAGDYSLLCSGPSENGQTWTGGDFVSSDKVIIWTENGQSYIYKLPASCLPASDSFRSDVGKAVENLIPPVQHILLDRKD 320
WD40-rpts _)(__________________WD 6__________________) (__
Query 321 KELLICPPVTRFFYGCREYFHKLLIQGDSSGRLNIWNISDTADKQGSEEGLAMTTSISLQEAFDKLNPCPAGIIDQLSVI 400
WD40-rpts _______________WD 7_________________) (__________________WD 8_________________
Query 401 PNSNEPLKVTASVYIPAHGRLVCGREDGSIVIVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSARY 480
WD40-rpts _)(_____________WD 9_____________) (________________________WD10_______
Query 481 DQRYLISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQLLVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRHL 560
WD40-rpts _________________) (____________________WD11___________________) (__________
Query 561 FPIQVIKWRPSDDYLVVGCSDGSVYVWQMDTGALDRCVMGITAVEILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAAL 640
WD40-rpts _______WD12________________) (_________________WD13________________)(_________
Query 641 KNMAHHKLQTLATNLLASEASDKGNLPKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENL 720
WD40-rpts ________WD14________________) (_________________WD15__
Query 721 QKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDDEEEDEEIMRQRREESDPEYRSSKSKPLTLLEYNLTMDTA 800
WD40-rpts _______________) (_______________________
Query 801 KLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGYNQPACKLSHGKTEVGRKLPASEGVGKGTY 880
WD40-rpts ____________WD16___________________________________)
Query 881 GVSRAVTTQHLLSIISLANTLMSMTNATFIGDHMKKGPTRPPRPSTPDLSKARGSPPTSSNIVQGQIKQVAAPVVSARSD 960
WD40-rpts
Query 961 ADHSGSDPPSAPALHTCFLVNEGWSQLAAMHCVMLPDLLGLDKFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQ 1040
WD40-rpts
Query 1041 AGRKEAIDAWAPYLPQYIDHVISPGVTSEAAQTITTAPDASGPEAKVQEEEHDLVDDDITTGCLSSVPQMKKISTSYEER 1120
WD40-rpts
Query 1121 RKQATAIVLLGVIGAEFGAEIEPPKLLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKALTFLLLQPPSPKLPPHSTIRRT 1200
WD40-rpts
Query 1201 AIDLIGRGFTVWEPYMDVSAVLMGLLELCADAEKQLANITMGLPLSPAADSARSARHALSLIATARPPAFITTIAKEVHR 1280
WD40-rpts
Query 1281 HTALAANTQSQQNMHTTTLARAKGEILRVIEILIEKMPTDVVDLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVS 1360
WD40-rpts (____________
Query 1361 YYERNHRIAVGARHGSVALYDIRTGKCQTIHGHKGPITAVAFAPDGRYLATYSNTDSHISFWQMNTSLLGSIGMLNSAPQ 1440
WD40-rpts __WD17______________) (_________________WD18_________________)(________________
Query 1441 LRCIKTYQVPPVQPASPGSHNALKLARLIWTSNRNVILMAHDGKEHRFMV 1490
WD40-rpts ___WD19___________________)
 19 WD40-repeats found in QUERY=ENSP00000254442 (Len=1490): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 8-47 7.40 420.25 0.00013 30.0% 54.32 WD 2: Seg 5 48-95 7.03 405.19 0.00022 40.0% 45.15 WD 3: Seg 9 107-142 4.86 315.57 0.00347 25.0% 43.19 WD 4: Seg 12 146-190 5.34 335.32 0.00188 30.0% 52.45 WD 5: Seg 16 198-242 4.44 297.87 0.00601 17.5% 33.88 WD 6: Seg 19 243-284 5.73 351.16 0.00115 10.0% 52.29 WD 7: Seg 25 318-357 6.26 373.24 0.00058 12.5% 45.37 WD 8: Seg 29 361-402 4.01 280.40 0.01032 12.5% 8.02 WD 9: Seg 31 403-434 6.46 381.42 0.00045 30.0% 46.32 WD10: Seg 34 445-498 7.68 431.95 9.4e-05 40.0% 47.79 WD11: Seg 38 502-546 6.37 377.96 0.00050 17.5% 55.07 WD12: Seg 42 550-588 8.89 482.04 2.0e-05 27.5% 55.17 WD13: Seg 46 592-630 7.00 403.95 0.00022 12.5% 52.56 WD14: Seg 50 631-669 4.17 286.73 0.00848 12.5% 17.44 WD15: Seg 55 697-736 6.27 373.52 0.00058 22.5% 46.91 WD16: Seg 60 777-852 3.45 257.26 0.02105 10.0% 5.45 WD17: Seg 64 1348-1381 6.44 380.84 0.00046 15.0% 46.33 WD18: Seg 67 1384-1423 8.24 455.24 4.6e-05 35.0% 53.56 WD19: Seg 71 1424-1467 6.44 380.53 0.00046 7.5% 43.48Multiple sequence alignment of 19 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 8-47 LP----I--VL--------W-----GRKAPTH------C--ISAVL---LT------DD-------------------------------------G------AT----IVTGCH-D-GQICLWD WD 2 48-95 LS----V--EL--------QINPRALLFGHTA------S--ITCLSKACAS------SD-------------------------------------K------QY----IVSASE-S-GEMCLWD WD 3 107-142 ---------LA--------C-----THTGIQF------Y--QFSVG---NQ------RE-------------------------------------G------RL----LCHGH--Y-PEILVVD WD 4 146-190 -L----E--VL--------Y-----SLVSKIS------PDWISSMS---II------RS-------------------------------------H------RTQEDTVVALSV-T-GILKVWI WD 5 198-242 -M----Q--DT--------E-----PIFEEESKPIYCQN--CQSIS---FC------AF-------------------------------------T------QR----SLLVVC-S-KYWRVFD WD 6 243-284 AG----DYSLL--------C-----SGPSENG------Q--TWTGG---DF------VS-------------------------------------S------DK----VIIWTE-N-GQSYIYK WD 7 318-357 RK----D--KE--------L-----LICPPVT------R--FFYGC---RE------YF-------------------------------------H------KL----LIQGDS-S-GRLNIWN WD 8 361-402 -T----A--DK--------Q-----GSEEGLA------M--TTSIS---LQ------EA-------------------------------------F------DK-LNPCPAGII-D-QLSVIPN WD 9 403-434 ---------------------------SNEPL------K--VTASV---YI------PA-------------------------------------H------GR----LVCGRE-D-GSIVIVP WD10 445-498 QG----E--HMLRRGWPPHR-----TLRGHRN------K--VTCLL---YPHQVSARYD-------------------------------------Q------RY----LISGGV-D-FSVIIWD WD11 502-546 -G----E--MK--------H-----IFCVHGG------E--ITQLL---VP------PE-------------------------------------NCSARVQHC----ICSVAS-D-HSVGLLS WD12 550-588 -K----K--CI--------M-----LASRHLF------P--IQVIK---WR------PS-------------------------------------D------DY----LVVGCS-D-GSVYVWQ WD13 592-630 -G----A--LD--------R-----CVMGITA------V--EILNA---CD------EA-------------------------------------V------PA----AVDSLS-H-PAVNLKQ WD14 631-669 -A----M--TR--------R-----SLAALKN------M--AHHKL---QT------LA-------------------------------------T------NL----LASEAS-D-KGNLPKY WD15 697-736 -A----L--II--------Q-----LLTEEAS------R--PNTAL---IS------PE-------------------------------------N------LQ----KASGSS-DKGGSFLTG WD16 777-852 -D----P--EY--------R-----SSKSKPL------T--LLEYN---LT------MDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFG------LL----SRGGHM-S-LMLPGYN WD17 1348-1381 -------------------------ECFPAIC------R--FYMVS---YY------ER-------------------------------------N------HR----IAVGAR-H-GSVALYD WD18 1384-1423 -T----G--KC--------Q-----TIHGHKG------P--ITAVA---FA------PD-------------------------------------G------RY----LATYSNTD-SHISFWQ WD19 1424-1467 MNTSLLG--SI--------G-----MLNSAPQ------L--RCIKT---YQ------VP-------------------------------------P------VQ----PASPGS-H-NALKLAR WD40 Template TG----E--CL--------R-----TLSGHTS------G--VTSVS---FS------PD-------------------------------------G------KR----LVSGSE-D-GTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |