WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000257191    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000257191 (Len=800)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000257191, Len=800):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVAPVLETSHVFCCPNRVRGVLNWSSGPRGLLAFGTSCSVVLYDPLKRVVVTNLNGHTARVNCIQWICKQDGSPSTELVS 80  
WD40-rpts          (_________________WD 1_________________)   (___________________WD 2_________

Query       81 GGSDNQVIHWEIEDNQLLKAVHLQGHEGPVYAVHAVYQRRTSDPALCTLIVSAAADSAVRLWSKKGPEVPILACGNDDCR 160 
WD40-rpts      __________)(_______________________WD 3_______________________)                 

Query      161 IHIFAQQNDQFQKVLSLCGHEDWIRGVEWAAFGRDLFLASCSQDCLIRIWKLYIKSTSLETQDDDNIRLKENTFTIENES 240 
WD40-rpts                (__________________WD 4_________________)                             

Query      241 VKIAFAVTLETVLAGHENWVNAVHWQPVFYKDGVLQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYD 320 
WD40-rpts           (______________________WD 5_____________________)(______________________WD 

Query      321 CQFNEDGSMIIAHAFHGALHLWKQNTVNPREWTPEIVISGHFDGVQDLVWDPEGEFIITVGTDQTTRLFAPWKRKDQSQV 400 
WD40-rpts      6_____________________)        (_________________WD 7________________)          

Query      401 TWHEIARPQIHGYDLKCLAMINRFQFVSGADEKVLRVFSAPRNFVENFCAITGQSLNHVLCNQDSDLPEGATVPALGLSN 480 
WD40-rpts       (________________WD 8________________)   (____________________WD 9_____________

Query      481 KAVFQGDIASQPSDEEELLTSTGFEYQQVAFQPSILTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNSSKTLLASAC 560 
WD40-rpts      ______)     (________________WD10________________)(___________________WD11______

Query      561 KAAKKEHAAIILWNTTSWKQVQNLVFHSLTVTQMAFSPNEKFLLAVSRDRTWSLWKKQDTISPEFEPVFSLFAFTNKITS 640 
WD40-rpts      _____________)   (_________________WD12________________)                (_______

Query      641 VHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECDSTDDCIEHNIGPCSSVLDVGGAVTAVSVCPVLHPSQRYVVAVGLEC 720 
WD40-rpts      __________WD13________________)(_________________________WD14___________________

Query      721 GKICLYTWKKTDQVPEINDWTHCVETSQSQSHTLAIRKLCWKNCSGKTEQKEAEGAEWLHFASCGEDHTVKIHRVNKCAL 800 
WD40-rpts      ______)(_______________________________WD15______________________________)      



15 WD40-repeats found in QUERY=ENSP00000257191 (Len=800):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       5.90  358.28  0.00092       10.0%     54.42
  WD 2:  Seg  5    48-91       6.87  398.59  0.00026       27.5%     55.70
  WD 3:  Seg  9    92-143      5.91  358.96  0.00090       22.5%     54.45
  WD 4:  Seg 15   171-211      7.19  411.81  0.00018       27.5%     53.40
  WD 5:  Seg 22   246-294      7.93  442.26  6.8e-05       32.5%     52.40
  WD 6:  Seg 26   295-343      7.32  417.11  0.00015       22.5%     57.45
  WD 7:  Seg 30   352-390      7.79  436.31  8.2e-05       22.5%     52.05
  WD 8:  Seg 34   402-439      4.92  317.82  0.00324       12.5%     47.10
  WD 9:  Seg 38   443-487      4.52  301.41  0.00539       10.0%     43.00
  WD10:  Seg 42   493-530      4.11  284.52  0.00908       15.0%     25.33
  WD11:  Seg 45   531-574      6.43  380.43  0.00046       22.5%     53.50
  WD12:  Seg 49   578-616      8.98  485.72  1.8e-05       32.5%     57.58
  WD13:  Seg 53   633-671      7.37  419.20  0.00014       30.0%     44.58
  WD14:  Seg 56   672-727      4.43  297.80  0.00602       22.5%     47.70
  WD15:  Seg 60   728-794      3.86  274.22  0.01248       17.5%     44.57
Multiple sequence alignment of 15 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-44     VLE---------T--------------SHVFCCPNRVRGVLNWSS-------------GPR--------G------LLAFG-----TSCSVVLYD
   WD 2   48-91     -RV---------V--------------VTNLNGHTARVNCIQWIC--------KQDGSPST--------E------LVSGG-----SDNQVIHWE
   WD 3   92-143    IED-----NQLLK--------------AVHLQGHEGPVYAVHAVY-------------QRRTSDPALCTL------IVSAA-----ADSAVRLWS
   WD 4  171-211    -FQ---------K--------------VLSLCGHEDWIRGVEWAA-------------FGR------DLF------LASCS-----QDCLIRIWK
   WD 5  246-294    AVT---------L--------------ETVLAGHENWVNAVHWQP----VFYKDGVLQQPV--------R------LLSAS-----MDKTMILWA
   WD 6  295-343    PDEESGVWLEQVR--------------VGEVGGNTLGFYDCQFNE-------------DGS--------M------IIAHA-----FHGALHLWK
   WD 7  352-390    -WT---------P--------------EIVISGHFDGVQDLVWDP-------------EGE--------F------IITVG-----TDQTTRLFA
   WD 8  402-439    -WH---------E--------------IARPQIHGYDLKCLAMIN-------------RFQ---------------FVSGA-----DEKVLRVFS
   WD 9  443-487    -NF---------V--------------ENFCAITGQSLNHVLCNQ-------------DSD--------LPEGATVPALGL-----SNKAVFQGD
   WD10  493-530    -SD---------E--------------EELLTSTGFEYQQVAFQP-------------SI---------L------TEPPT-----EDHLLQNTL
   WD11  531-574    -WP---------E--------------VQKLYGHGYEIFCVTCNS-------------SKT--------L------LASACKAAKKEHAAIILWN
   WD12  578-616    -WK---------Q--------------VQNLVFHSLTVTQMAFSP-------------NEK--------F------LLAVS-----RDRTWSLWK
   WD13  633-671    -AF---------T--------------NKITSVHSRIIWSCDWSP-------------DSK--------Y------FFTGS-----RDKKVVVWG
   WD14  672-727    ECD---------S---TDDCIEHNIGPCSSVLDVGGAVTAVSVCP--------VLHPSQRY--------V------VAVGL-----ECGKICLYT
   WD15  728-794    WKK---------TDQVPEINDWTHCVETSQSQSHTLAIRKLCWKNCSGKTEQKEAEGAEWL--------H------FASCG-----EDHTVKIHR

   WD40 Template    TGE---------C--------------LRTLSGHTSGVTSVSFSP-------------DGK--------R------LVSGS-----EDGTIKVWD


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Last modified: 09 Jan 2019