WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000259154    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000259154 (Len=815)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000259154, Len=815):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGGHCGSFPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDETGAIFIDRDPAAFAPILNFLRT 80  
WD40-rpts                                                                                      

Query       81 KELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSSCGSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEAR 160 
WD40-rpts                                                                                      

Query      161 GNGTQPVLSGTGEETVRLGFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQVFTSPYLDWTIERVALNAKVVG 240 
WD40-rpts                                                                                      

Query      241 GPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVPVDALFFIGNQLVATSHTGKVGVWNAVTQHWQVQDVVPITS 320 
WD40-rpts                              (_________________WD 1_________________)                

Query      321 YDTAGSFLLLGCNNGSIYYIDMQKFPLRMKDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVI 400 
WD40-rpts                                                                                      

Query      401 VQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFKILSLEETESHG 480 
WD40-rpts                                                                                      

Query      481 SYSSGNDIGPFGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGHT 560 
WD40-rpts                                                      (_____________________WD 2______

Query      561 NGSIQMWDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCDLSTSRCATPNISPATSVVQHSHLRESNSSLQLQHHDTTHE 640 
WD40-rpts      _______________)                                                                

Query      641 AATYGSMRPYRESPLLARARRTESFHSYRDFQTINLNRNVERAVPENGNLGPIQAEVKGATGECNISERKSPGVEIKSLR 720 
WD40-rpts                                                                                      

Query      721 ELDSGLEVHKIAEGFSESKKRSSEDENENKIEFRKKGGFEGGGFLGRKKVPYLASSPSTSDGGTDSPGTASPSPTKTTPS 800 
WD40-rpts                                                                                      

Query      801 PRHKKSDSSGQEYSL 815 
WD40-rpts                     



2 WD40-repeats found in QUERY=ENSP00000259154 (Len=815):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   265-304      4.69  308.40  0.00434       25.0%     22.26
  WD 2:  Seg 29   529-576      4.87  315.77  0.00345       20.0%     20.53
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  265-304    DGGSGSEIGVFSLGVPVDALFFIGNQLVATSHTGKVGVWN--------
   WD 2  529-576    DCTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQMWDLTTAMDMV

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD--------


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Last modified: 09 Jan 2019