WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000260570    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000260570 (Len=1749)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000260570, Len=1749):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTK 80  
WD40-rpts          (_________________WD 1_________________)           (_________________WD 2___

Query       81 IAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAEYIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTT 160 
WD40-rpts      _____________)(____________________WD 3___________________)  (_________________W

Query      161 NCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQE 240 
WD40-rpts      D 4________________)      (________________WD 5_______________)      (__________

Query      241 REFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRS 320 
WD40-rpts      ______WD 6________________)        (_________________WD 7________________)      

Query      321 IYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEK 400 
WD40-rpts                                                                                      

Query      401 YFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIG 480 
WD40-rpts                            (______________________WD 8______________________)  (_____

Query      481 TVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTM 560 
WD40-rpts      ____________WD 9________________)                                               

Query      561 FTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQ 640 
WD40-rpts                                                                                      

Query      641 LHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHR 720 
WD40-rpts                                                                                      

Query      721 WDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPAKAARLVLTREELLANTELVE 800 
WD40-rpts                                                                                      

Query      801 HITAALIKGELYERAGDLFEKIHNPQKALECYRKGNAFMKAVELARLAFPVEVVKLEEAWGDHLVQQKQLDAAINHYIEA 880 
WD40-rpts                                                                                      

Query      881 RCSIKAIEAALGARQWKKAIYILDLQDRNTASKYYPLVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKL 960 
WD40-rpts                                                                                      

Query      961 AMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVQEPDLAITMYKKHKLYDDMIRLVGKHHPDLLSDTHLHLGKELE 1040
WD40-rpts                                                                                      

Query     1041 AEGRLQEAEYHYLEAQEWKATVNMYRASGLWEEAYRVARTQGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEAAVDHA 1120
WD40-rpts                                                                                      

Query     1121 ADNCSFEFAFELSRLALKHKTPEVHLKYAMFLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVA 1200
WD40-rpts                                                                                      

Query     1201 EVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPSQLEALQEEYEREATKKGARGVEGFV 1280
WD40-rpts                                                                                      

Query     1281 EQARHWEQAGEYSRAVDCYLKVRDSGNSGLAEKCWMKAAELSIKFLPPQRNMEVVLAVGPQLIGIGKHSAAAELYLNLDL 1360
WD40-rpts                                                                                      

Query     1361 VKEAIDAFIEGEEWNKAKRVAKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVIAALDLYVEQGQWDKCIETATKQNYK 1440
WD40-rpts                                                                                      

Query     1441 ILHKYVALYATHLIREGSSAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNCAEAYHSWADLRDVLFNLCENLVKS 1520
WD40-rpts                                                                                      

Query     1521 SEANSPAHEEFKTMLLIAHYYATRSAAQSVKQLETVAARLSVSLLRHTQLLPVDKAFYEAGIAAKAVGWDNMAFIFLNRF 1600
WD40-rpts                                                                                      

Query     1601 LDLTDAIEEGTLDGLDHSDFQDTDIPFEVPLPAKQHVPEAEREEVRDWVLTVSMDQRLEQVLPRDERGAYEASLVAASTG 1680
WD40-rpts                                                                                      

Query     1681 VRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGGLPSTSFSFQ 1749
WD40-rpts                                                                           



9 WD40-repeats found in QUERY=ENSP00000260570 (Len=1749):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       5.90  358.58  0.00091       15.0%     45.92
  WD 2:  Seg  5    56-94       6.67  390.02  0.00034       22.5%     46.09
  WD 3:  Seg  8    95-139      4.52  301.45  0.00538       15.0%     53.99
  WD 4:  Seg 12   142-180      6.76  393.86  0.00031       32.5%     51.43
  WD 5:  Seg 16   187-223      4.45  298.37  0.00592       17.5%     45.50
  WD 6:  Seg 20   230-267      4.13  285.33  0.00886       22.5%     43.99
  WD 7:  Seg 24   276-314      5.86  356.62  0.00097       22.5%     45.13
  WD 8:  Seg 38   423-472      3.58  262.70  0.01781       17.5%     44.10
  WD 9:  Seg 42   475-513      4.82  313.95  0.00365       17.5%     54.04
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-44     HLR-----TL----------LSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYD
   WD 2   56-94     -KP-----AD----------MKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYK
   WD 3   95-139    IGEDWGDKKV----------ICNKFIQTSAVTCLQWPAEYIIVFGLAEGKVRLAN
   WD 4  142-180    -TN-----KS----------STIYGTESYVVSLTTNCSGKGILSGHADGTIVRYF
   WD 5  187-223    -GE-----SQ----------GKLVNHPCPPYALAWATNS--IVAAGCDRKIVAYG
   WD 6  230-267    -QT-----FD----------YSRDPQEREFTTAVSSPGGQSVVLGSYD-RLRVFN
   WD 7  276-314    -EE-----AK----------PKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFD
   WD 8  423-472    GNN-----DTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVD
   WD 9  475-513    -GG-----YN----------IGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYD

   WD40 Template    TGE-----CL----------RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019