WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000262335    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000262335 (Len=462)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000262335, Len=462):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAAVPDEAVARDVQRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIVSSLGKTLESQ 80  
WD40-rpts       (_________________WD 1_________________)                                       

Query       81 AVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVL 160 
WD40-rpts                               (________________WD 2_______________)   (______________

Query      161 SISWSPDGRKLASGCKNGQVGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSA 240 
WD40-rpts      ___WD 3________________)     (_______WD 4_______)   (________________WD 5_______

Query      241 SQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPER 320 
WD40-rpts      _________)   (_________________WD 6________________)   (_________________WD 7___

Query      321 LVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS 400 
WD40-rpts      _____________)(___________________WD 8__________________)   (_________________WD

Query      401 ADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIWRR 462 
WD40-rpts       9________________)   (_________________WD10________________) 



10 WD40-repeats found in QUERY=ENSP00000262335 (Len=462):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       7.88  440.04  7.3e-05       12.5%     32.95
  WD 2:  Seg  9   106-142     10.23  537.04  3.6e-06       50.0%     49.81
  WD 3:  Seg 13   146-184      8.85  480.04  2.1e-05       35.0%     52.16
  WD 4:  Seg 17   190-209      3.09  242.15  0.03343       17.5%     30.35
  WD 5:  Seg 19   213-250      9.21  494.92  1.3e-05       50.0%     54.64
  WD 6:  Seg 23   254-292      8.42  462.58  3.6e-05       27.5%     53.01
  WD 7:  Seg 27   296-334      8.54  467.33  3.1e-05       27.5%     47.27
  WD 8:  Seg 31   335-377      9.56  509.39  8.5e-06       40.0%     55.11
  WD 9:  Seg 35   381-419     10.64  554.22  2.1e-06       47.5%     56.60
  WD10:  Seg 39   423-461      9.72  516.33  6.8e-06       35.0%     49.78
Multiple sequence alignment of 10 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    2-41     AAA---VPDEAVARDVQRLLVQFQDEGGQLLGSPFDVPVDITP
   WD 2  106-142    ------CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD
   WD 3  146-184    -ET---PHFTCKGHRHWVLSISWSPDGRKLASGCKNGQVGLSW
   WD 4  190-209    -----------------------NPECRYVASSSKDGSVRIWD
   WD 5  213-250    -GR---CERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWR
   WD 6  254-292    -GV---LCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNP
   WD 7  296-334    -QG---SLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWS
   WD 8  335-377    PAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWD
   WD 9  381-419    -GK---YLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWD
   WD10  423-461    -QK---LAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIWR

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019