Input parameters:
Query = ENSP00000262335 (Len=462)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000262335, Len=462):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAAVPDEAVARDVQRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIVSSLGKTLESQ 80
WD40-rpts (_________________WD 1_________________)
Query 81 AVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVL 160
WD40-rpts (________________WD 2_______________) (______________
Query 161 SISWSPDGRKLASGCKNGQVGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSA 240
WD40-rpts ___WD 3________________) (_______WD 4_______) (________________WD 5_______
Query 241 SQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPER 320
WD40-rpts _________) (_________________WD 6________________) (_________________WD 7___
Query 321 LVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS 400
WD40-rpts _____________)(___________________WD 8__________________) (_________________WD
Query 401 ADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIWRR 462
WD40-rpts 9________________) (_________________WD10________________)
10 WD40-repeats found in QUERY=ENSP00000262335 (Len=462):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 2-41 7.88 440.04 7.3e-05 12.5% 32.95
WD 2: Seg 9 106-142 10.23 537.04 3.6e-06 50.0% 49.81
WD 3: Seg 13 146-184 8.85 480.04 2.1e-05 35.0% 52.16
WD 4: Seg 17 190-209 3.09 242.15 0.03343 17.5% 30.35
WD 5: Seg 19 213-250 9.21 494.92 1.3e-05 50.0% 54.64
WD 6: Seg 23 254-292 8.42 462.58 3.6e-05 27.5% 53.01
WD 7: Seg 27 296-334 8.54 467.33 3.1e-05 27.5% 47.27
WD 8: Seg 31 335-377 9.56 509.39 8.5e-06 40.0% 55.11
WD 9: Seg 35 381-419 10.64 554.22 2.1e-06 47.5% 56.60
WD10: Seg 39 423-461 9.72 516.33 6.8e-06 35.0% 49.78
Multiple sequence alignment of 10 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 2-41 AAA---VPDEAVARDVQRLLVQFQDEGGQLLGSPFDVPVDITP
WD 2 106-142 ------CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD
WD 3 146-184 -ET---PHFTCKGHRHWVLSISWSPDGRKLASGCKNGQVGLSW
WD 4 190-209 -----------------------NPECRYVASSSKDGSVRIWD
WD 5 213-250 -GR---CERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWR
WD 6 254-292 -GV---LCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNP
WD 7 296-334 -QG---SLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWS
WD 8 335-377 PAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWD
WD 9 381-419 -GK---YLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWD
WD10 423-461 -QK---LAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIWR
WD40 Template TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD