WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000262394    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000262394 (Len=421)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000262394, Len=421):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASFPPRVNEKEIVRLRTIGELLAPAAPFDKKCGRENWTVAFAPDGSYFAWSQGHRTVKLVPWSQCLQNFLLHGTKNVTN 80  
WD40-rpts                                    (_____________WD 1_____________)(_________________

Query       81 SSSLRLPRQNSDGGQKNKPREHIIDCGDIVWSLAFGSSVPEKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTG 160 
WD40-rpts      _WD 2__________________)           (__________________WD 3_________________)   (

Query      161 KLLLNLVDHTEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFL 240 
WD40-rpts      _________________WD 4_________________)    (_________________WD 5_______________

Query      241 WNMDKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVYIWDPHNGDILMEFGHLFPPPTPIFAGGANDRWVRSVSFS 320 
WD40-rpts      _)   (_________________WD 6________________)                (_________________WD

Query      321 HDGLHVASLADDKMVRFWRIDEDYPVQVAPLSNGLCCAFSTDGSVLAAGTHDGSVYFWATPRQVPSLQHLCRMSIRRVMP 400 
WD40-rpts       7________________)(_________________WD 8_________________)  (_________________W

Query      401 TQEVQELPIPSKLLEFLSYRI 421 
WD40-rpts      D 9________________) 



9 WD40-repeats found in QUERY=ENSP00000262394 (Len=421):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    31-62       5.73  351.56  0.00114       20.0%     47.07
  WD 2:  Seg  5    63-104      6.64  388.96  0.00036       17.5%     40.74
  WD 3:  Seg  9   116-156      7.66  431.05  9.6e-05       25.0%     52.85
  WD 4:  Seg 13   160-199      9.28  498.05  1.2e-05       47.5%     57.65
  WD 5:  Seg 17   204-242      9.52  507.81  8.9e-06       32.5%     54.39
  WD 6:  Seg 21   246-284      9.94  525.24  5.2e-06       37.5%     54.97
  WD 7:  Seg 26   301-339      8.03  446.16  6.0e-05       27.5%     45.89
  WD 8:  Seg 29   340-379      8.30  457.53  4.2e-05       27.5%     51.25
  WD 9:  Seg 32   382-420      6.09  366.26  0.00072        7.5%     41.47
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   31-62     --------KKCGRE--NW--TVAFAPDGSY-FAWSQGHRTVKLVP
   WD 2   63-104    WSQCLQNFLLHGTKNVTN--SSSLRLPRQN-SDGGQKNKPREHII
   WD 3  116-156    -GSSVP--EKQSRCVNIEWHRFRFGQDQLL-LATGLNNGRIKIWD
   WD 4  160-199    -GKLLL--NLVDHTEVVR--DLTFAPDGSLILVSASRDKTLRVWD
   WD 5  204-242    -GNMMK--VLRGHQNWVY--SCAFSPDSSM-LCSVGASKAVFLWN
   WD 6  246-284    -YTMIR--KLEGHHHDVV--ACDFSPDGAL-LATASYDTRVYIWD
   WD 7  301-339    -PTPIF--AGGANDRWVR--SVSFSHDGLH-VASLADDKMVRFWR
   WD 8  340-379    IDEDYP--VQVAPLSNGL--CCAFSTDGSV-LAAGTHDGSVYFWA
   WD 9  382-420    -RQVPS--LQHLCRMSIR--RVMPTQEVQE-LPIPSKLLEFLSYR

   WD40 Template    TGECLR--TLSGHTSGVT--SVSFSPDGKR-LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019