Input parameters:
Query = ENSP00000262394 (Len=421)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000262394, Len=421):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASFPPRVNEKEIVRLRTIGELLAPAAPFDKKCGRENWTVAFAPDGSYFAWSQGHRTVKLVPWSQCLQNFLLHGTKNVTN 80
WD40-rpts (_____________WD 1_____________)(_________________
Query 81 SSSLRLPRQNSDGGQKNKPREHIIDCGDIVWSLAFGSSVPEKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTG 160
WD40-rpts _WD 2__________________) (__________________WD 3_________________) (
Query 161 KLLLNLVDHTEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFL 240
WD40-rpts _________________WD 4_________________) (_________________WD 5_______________
Query 241 WNMDKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVYIWDPHNGDILMEFGHLFPPPTPIFAGGANDRWVRSVSFS 320
WD40-rpts _) (_________________WD 6________________) (_________________WD
Query 321 HDGLHVASLADDKMVRFWRIDEDYPVQVAPLSNGLCCAFSTDGSVLAAGTHDGSVYFWATPRQVPSLQHLCRMSIRRVMP 400
WD40-rpts 7________________)(_________________WD 8_________________) (_________________W
Query 401 TQEVQELPIPSKLLEFLSYRI 421
WD40-rpts D 9________________)
9 WD40-repeats found in QUERY=ENSP00000262394 (Len=421):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 31-62 5.73 351.56 0.00114 20.0% 47.07
WD 2: Seg 5 63-104 6.64 388.96 0.00036 17.5% 40.74
WD 3: Seg 9 116-156 7.66 431.05 9.6e-05 25.0% 52.85
WD 4: Seg 13 160-199 9.28 498.05 1.2e-05 47.5% 57.65
WD 5: Seg 17 204-242 9.52 507.81 8.9e-06 32.5% 54.39
WD 6: Seg 21 246-284 9.94 525.24 5.2e-06 37.5% 54.97
WD 7: Seg 26 301-339 8.03 446.16 6.0e-05 27.5% 45.89
WD 8: Seg 29 340-379 8.30 457.53 4.2e-05 27.5% 51.25
WD 9: Seg 32 382-420 6.09 366.26 0.00072 7.5% 41.47
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 31-62 --------KKCGRE--NW--TVAFAPDGSY-FAWSQGHRTVKLVP
WD 2 63-104 WSQCLQNFLLHGTKNVTN--SSSLRLPRQN-SDGGQKNKPREHII
WD 3 116-156 -GSSVP--EKQSRCVNIEWHRFRFGQDQLL-LATGLNNGRIKIWD
WD 4 160-199 -GKLLL--NLVDHTEVVR--DLTFAPDGSLILVSASRDKTLRVWD
WD 5 204-242 -GNMMK--VLRGHQNWVY--SCAFSPDSSM-LCSVGASKAVFLWN
WD 6 246-284 -YTMIR--KLEGHHHDVV--ACDFSPDGAL-LATASYDTRVYIWD
WD 7 301-339 -PTPIF--AGGANDRWVR--SVSFSHDGLH-VASLADDKMVRFWR
WD 8 340-379 IDEDYP--VQVAPLSNGL--CCAFSTDGSV-LAAGTHDGSVYFWA
WD 9 382-420 -RQVPS--LQHLCRMSIR--RVMPTQEVQE-LPIPSKLLEFLSYR
WD40 Template TGECLR--TLSGHTSGVT--SVSFSPDGKR-LVSGSEDGTIKVWD