WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000262715 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000262715 (Len=2627) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000262715, Len=2627): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEKLHGHVSAHPDILSLENRCLAMLPDLQPLEKLHQHVSTHSDILSLKNQCLATLPDLKTMEKPHGYVSAHPDILSLENQ 80
WD40-rpts
Query 81 CLATLSDLKTMEKPHGHVSAHPDILSLENRCLATLSSLKSTVSASPLFQSLQISHMTQADLYRVNNSNCLLSEPPSWRAQ 160
WD40-rpts
Query 161 HFSKGLDLSTCPIALKSISATETAQEATLGRWFDSEEKKGAETQMPSYSLSLGEEEEVEDLAVKLTSGDSESHPEPTDHV 240
WD40-rpts
Query 241 LQEKKMALLSLLCSTLVSEVNMNNTSDPTLAAIFEICRELALLEPEFILKASLYARQQLNVRNVANNILAIAAFLPACRP 320
WD40-rpts
Query 321 HLRRYFCAIVQLPSDWIQVAELYQSLAEGDKNKLVPLPACLRTAMTDKFAQFDEYQLAKYNPRKHRAKRHPRRPPRSPGM 400
WD40-rpts
Query 401 EPPFSHRCFPRYIGFLREEQRKFEKAGDTVSEKKNPPRFTLKKLVQRLHIHKPAQHVQALLGYRYPSNLQLFSRSRLPGP 480
WD40-rpts
Query 481 WDSSRAGKRMKLSRPETWERELSLRGNKASVWEELIENGKLPFMAMLRNLCNLLRVGISSRHHELILQRLQHAKSVIHSR 560
WD40-rpts
Query 561 QFPFRFLNAHDAIDALEAQLRNQALPFPSNITLMRRILTRNEKNRPRRRFLCHLSRQQLRMAMRIPVLYEQLKREKLRVH 640
WD40-rpts
Query 641 KARQWKYDGEMLNRYRQALETAVNLSVKHSLPLLPGRTVLVYLTDANADRLCPKSNPQGPPLNYALLLIGMMITRAEQVD 720
WD40-rpts
Query 721 VVLCGGDTLKTAVLKAEEGILKTAIKLQAQVQEFDENDGWSLNTFGKYLLSLAGQRVPVDRVILLGQSMDDGMINVAKQL 800
WD40-rpts
Query 801 YWQRVNSKCLFVGILLRRVQYLSTDLNPNDVTLSGCTDAILKFIAEHGASHLLEHVGQMDKIFKIPPPPGKTGVQSLRPL 880
WD40-rpts
Query 881 EEDTPSPLAPVSQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGVTEEETRRNRQLEVCL 960
WD40-rpts
Query 961 GEVENAQLFVGILGSRYGYIPPSYNLPDHPHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPD 1040
WD40-rpts
Query 1041 AWKSDFVSESEEAARRISELKSYLSRQKGITCRRYPCEWGGVAAGRPYVGGLEEFGQLVLQDVWNMIQKLYLQPGALLEQ 1120
WD40-rpts
Query 1121 PVSIPDDDLVQATFQQLQKPPSPARPRLLQDTVQRLMLPHGRLSLVTGQSGQGKTAFLASLVSALQAPDGAKVASLVFFH 1200
WD40-rpts
Query 1201 FSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQQRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLIS 1280
WD40-rpts
Query 1281 DWIPKKLPRCVHLVLSVSSDAGLGETLEQSQGAHVLALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESG 1360
WD40-rpts
Query 1361 RPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSGLTVDQLHGVLSVWRT 1440
WD40-rpts
Query 1441 LPKGTKSWEEAVAAGNSGDPYPMGPFACLVQSLRSLLGEGPLERPGARLCLPDGPLRTAAKRCYGKRPGLEDTAHILIAA 1520
WD40-rpts
Query 1521 QLWKTCDADASGTFRSCPPEALGDLPYHLLQSGNRGLLSKFLTNLHVVAAHLELGLVSRLLEAHALYASSVPKEEQKLPE 1600
WD40-rpts
Query 1601 ADVAVFRTFLRQQASILSQYPRLLPQQAANQPLDSPLCHQASLLSRRWHLQHTLRWLNKPRTMKNQQSSSLSLAVSSSPT 1680
WD40-rpts (______________
Query 1681 AVAFSTNGQRAAVGTANGTVYLLDLRTWQEEKSVVSGCDGISACLFLSDDTLFLTAFDGLLELWDLQHGCRVLQTKAHQY 1760
WD40-rpts ___WD 1________________) (________________WD 2________________) (___________
Query 1761 QITGCCLSPDCRLLATVCLGGCLKLWDTVRGQLAFQHTYPKSLNCVAFHPEGQVIATGSWAGSISFFQVDGLKVTKDLGA 1840
WD40-rpts ______WD 3________________)(__________________WD 4_________________) (________
Query 1841 PGASIRTLAFNVPGGVVAVGRLDSMVELWAWREGARLAAFPAHHGFVAAALFLHAGCQLLTAGEDGKVQVWSGSLGRPRG 1920
WD40-rpts _________WD 5________________) (_________________WD 6________________) (____
Query 1921 HLGSLSLSPALSVALSPDGDRVAVGYRADGIRIYKISSGSQGAQGQALDVAVSALAWLSPKVLVSGAEDGSLQGWALKEC 2000
WD40-rpts _____________WD 7_________________) (________________WD 8________________)(___
Query 2001 SLQSLWLLSRFQKPVLGLATSQELLASASEDFTVQLWPRQLLTRPHKAEDFPCGTELRGHEGPVSCCSFSTDGGSLATGG 2080
WD40-rpts _______________WD 9__________________) (_________________WD10________
Query 2081 RDRSLLCWDVRTPKTPVLIHSFPACHRDWVTGCAWTKDNLLISCSSDGSVGLWDPESGQRLGQFLGHQSAVSAVAAVEEH 2160
WD40-rpts ________)(____________________WD11___________________) (________________WD12__
Query 2161 VVSVSRDGTLKVWDHQGVELTSIPAHSGPISHCAAAMEPRAAGQPGSELLVVTVGLDGATRLWHPLLVCQTHTLLGHSGP 2240
WD40-rpts _____________) (_____________________WD13_____________________) (____________
Query 2241 VRAAAVSETSGLMLTASEDGSVRLWQVPKEADDTCIPRSSAAVTAVAWAPDGSMAVSGNQAGELILWQEAKAVATAQAPG 2320
WD40-rpts _____WD14________________) (_________________WD15________________)(___________
Query 2321 HIGALIWSSAHTFFVLSADEKISEWQVKLRKGSAPGNLSLHLNRILQEDLGVLTSLDWAPDGHFLILAKADLKLLCMKPG 2400
WD40-rpts _____WD16________________) (_________________WD17________________)
Query 2401 DAPSEIWSSYTENPMILSTHKEYGIFVLQPKDPGVLSFLRQKESGEFEERLNFDINLENPSRTLISITQAKPESESSFLC 2480
WD40-rpts
Query 2481 ASSDGILWNLAKCSPEGEWTTGNMWQKKANTPETQTPGTDPSTCRESDASMDSDASMDSEPTPHLKTRQRRKIHSGSVTA 2560
WD40-rpts (_____________________WD18
Query 2561 LHVLPELLVTASKDRDVKLWERPSMQLLGLFRCEGSVSCLEPWLGANSTLQLAVGDVQGNVYFLNWE 2627
WD40-rpts ____________________)
 18 WD40-repeats found in QUERY=ENSP00000262715 (Len=2627): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 18 1666-1704 5.04 322.89 0.00277 27.5% 46.36 WD 2: Seg 21 1708-1745 5.26 332.05 0.00208 17.5% 54.98 WD 3: Seg 25 1749-1787 7.89 440.51 7.2e-05 27.5% 58.85 WD 4: Seg 29 1788-1828 7.17 410.75 0.00018 25.0% 57.68 WD 5: Seg 33 1832-1870 7.51 424.73 0.00012 15.0% 56.00 WD 6: Seg 37 1874-1912 8.33 458.88 4.1e-05 30.0% 54.89 WD 7: Seg 41 1916-1955 6.07 365.52 0.00074 30.0% 57.37 WD 8: Seg 45 1959-1996 5.85 356.47 0.00098 27.5% 52.29 WD 9: Seg 49 1997-2038 6.12 367.59 0.00069 22.5% 51.81 WD10: Seg 53 2051-2089 8.32 458.34 4.1e-05 37.5% 47.59 WD11: Seg 56 2090-2134 5.93 359.42 0.00089 27.5% 45.80 WD12: Seg 60 2138-2174 7.77 435.60 8.4e-05 42.5% 53.36 WD13: Seg 64 2177-2224 5.71 350.36 0.00118 17.5% 57.05 WD14: Seg 68 2228-2266 8.21 453.99 4.7e-05 27.5% 57.23 WD15: Seg 72 2270-2308 7.13 409.13 0.00019 27.5% 54.97 WD16: Seg 76 2309-2346 2.85 232.55 0.04478 15.0% 42.40 WD17: Seg 79 2360-2398 4.66 307.04 0.00452 22.5% 42.25 WD18: Seg 91 2535-2581 5.44 339.39 0.00166 25.0% 46.80Multiple sequence alignment of 18 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1666-1704 -Q---------Q------S--SSLSLAVS-SSPTAVAFSTNGQ---------RAAVGTANGTVYLLD WD 2 1708-1745 -W---------Q------E--EKSVVSGC-DGISACLFLSDDT---------LFLT-AFDGLLELWD WD 3 1749-1787 -G---------C------R--VLQTKAHQ-YQITGCCLSPDCR---------LLATVCLGGCLKLWD WD 4 1788-1828 TV---------R-----GQ--LAFQHTYP-KSLNCVAFHPEGQ---------VIATGSWAGSISFFQ WD 5 1832-1870 -L---------K------V--TKDLGAPG-ASIRTLAFNVPGG---------VVAVGRLDSMVELWA WD 6 1874-1912 -G---------A------R--LAAFPAHH-GFVAAALFLHAGC---------QLLTAGEDGKVQVWS WD 7 1916-1955 -G---------R------P--RGHLGSLSLSPALSVALSPDGD---------RVAVGYRADGIRIYK WD 8 1959-1996 -G---------S------Q--GAQGQALD-VAVSALAWL-SPK---------VLVSGAEDGSLQGWA WD 9 1997-2038 LK---------E------CSLQSLWLLSR-FQKPVLGLATSQE---------LLASASEDFTVQLWP WD10 2051-2089 -F---------P------C--GTELRGHE-GPVSCCSFSTDGG---------SLATGGRDRSLLCWD WD11 2090-2134 VR---------TPKTPVLI--HSFPACHR-DWVTGCAWTKDN----------LLISCSSDGSVGLWD WD12 2138-2174 -G---------Q------R--LGQFLGHQ-SAVSAVAAVEEH-----------VVSVSRDGTLKVWD WD13 2177-2224 -G---------V------E--LTSIPAHS-GPISHCAAAMEPRAAGQPGSELLVVTVGLDGATRLWH WD14 2228-2266 -V---------C------Q--THTLLGHS-GPVRAAAVSETSG---------LMLTASEDGSVRLWQ WD15 2270-2308 -E---------A------D--DTCIPRSS-AAVTAVAWAPDGS---------MAVSGNQAGELILWQ WD16 2309-2346 EA---------K------A--VATAQA-P-GHIGALIWSS-AH---------TFFVLSADEKISEWQ WD17 2360-2398 -L---------H------L--NRILQEDL-GVLTSLDWAPDGH---------FLILAKADLKLLCMK WD18 2535-2581 ASMDSEPTPHLK------T--RQRRKIHS-GSVTALHVLPE-----------LLVTASKDRDVKLWE WD40 Template TG---------E------C--LRTLSGHT-SGVTSVSFSPDGK---------RLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |