WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000263150    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000263150 (Len=494)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000263150, Len=494):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPTESASCSTARQTKQKRKSHSLSIRRTNSSEQERTGLPRDMLEGQDSKLPSSVRSTLLELFGQIEREFENLYIENLELR 80  
WD40-rpts                        (_______________________________________WD 1__________________

Query       81 REIDTLNERLAAEGQAIDGAELSKGQLKTKASHSTSQLSQKLKTTYKASTSKIVSSFKTTTSRAACQLVKEYIGHRDGIW 160 
WD40-rpts      ____________________)(________________WD 2_______________)       (______________

Query      161 DVSVAKTQPVVLGTASADHTALLWSIETGKCLVKYAGHVGSVNSIKFHPSEQLALTASGDQTAHIWRYAVQLPTPQPVAD 240 
WD40-rpts      ___WD 3_________________)   (_________________WD 4________________)             

Query      241 TSISGEDEVECSDKDEPDLDGDVSSDCPTIRVPLTSLKSHQGVVIASDWLVGGKQAVTASWDRTANLYDVETSELVHSLT 320 
WD40-rpts                              (____________________WD 5___________________)   (_______

Query      321 GHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFTVGDNVVSGSDDRTVKVWDLKNMRS 400 
WD40-rpts      __________WD 6________________)     (________________WD 7________________)   (__

Query      401 PIATIRTDSAINRINVCVGQKIIALPHDNRQVRLFDMSGVRLARLPRSSRQGHRRMVCCSAWSEDHPVCNLFTCGFDRQA 480 
WD40-rpts      _______________WD 8________________)(_____________________WD 9__________________

Query      481 IGWNINIPALLQEK 494 
WD40-rpts      ___)          



9 WD40-repeats found in QUERY=ENSP00000263150 (Len=494):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    19-101      2.98  237.80  0.03818       15.0%     17.45
  WD 2:  Seg  4   102-138      5.09  324.97  0.00260       15.0%     40.46
  WD 3:  Seg  8   146-185      7.80  437.00  8.0e-05       25.0%     44.07
  WD 4:  Seg 11   189-227      9.91  524.01  5.4e-06       32.5%     58.11
  WD 5:  Seg 17   265-309      8.38  460.77  3.8e-05       27.5%     51.04
  WD 6:  Seg 21   313-351      9.76  517.68  6.6e-06       30.0%     55.82
  WD 7:  Seg 25   357-394      8.35  459.40  4.0e-05       45.0%     50.73
  WD 8:  Seg 29   398-436      7.88  440.33  7.2e-05        7.5%     51.57
  WD 9:  Seg 33   437-484      6.31  375.26  0.00055       20.0%     41.78
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   19-101    KSH------S-----LSIRRTNSSEQERTGLPRDMLEGQDS--KLPSSVRSTLLELFGQIEREFENLYIENLELRREIDTLNERLAAEGQAIDGAE
   WD 2  102-138    LSK-----GQ-----LKTKASH---------STSQLSQKLK--TTY--------------------------KA------------STSKIVSSFK
   WD 3  146-185    -CQ------L-----VKEYIGHRD-----GIWDVSVAKTQP-VVLG--------------------------TA------------SADHTALLWS
   WD 4  189-227    -GK------C-----LVKYAGHVG-----SVNSIKFHPSEQ--LAL--------------------------TA------------SGDQTAHIWR
   WD 5  265-309    SDC------PTIRVPLTSLKSHQG-----VVIASDWLVGGK--QAV--------------------------TA------------SWDRTANLYD
   WD 6  313-351    -SE------L-----VHSLTGHDQ-----ELTHCCTHPTQR--LVV--------------------------TS------------SRDTTFRLWD
   WD 7  357-394    -IH------S-----VNVFQGHTD-----TVTSAVFTV-GD--NVV--------------------------SG------------SDDRTVKVWD
   WD 8  398-436    -MR------S-----PIATIRTDS-----AINRINVCVGQK--IIA--------------------------LP------------HDNRQVRLFD
   WD 9  437-484    MSGVRLARLP-----RSSRQGHRR-----MVCCSAWSEDHPVCNLF--------------------------TC------------GFDRQAIGWN

   WD40 Template    TGE------C-----LRTLSGHTS-----GVTSVSFSPDGK--RLV--------------------------SG------------SEDGTIKVWD


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Last modified: 09 Jan 2019