WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000263208    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000263208 (Len=1017)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000263208, Len=1017):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLLKPTWVNHNGKPIFSVDIHPDGTKFATGGQGQDSGKVVIWNMSPVLQEDDEKDENIPKMLCQMDNHLACVNCVRWSN 80  
WD40-rpts            (________________WD 1________________)               (_________________WD 

Query       81 SGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQWRCVSILRNHSGDVMDVAWSPHDAWLASCSVDNTVVIWNA 160 
WD40-rpts      2________________)                      (_________________WD 3________________) 

Query      161 VKFPEILATLRGHSGLVKGLTWDPVGKYIASQADDRSLKVWRTLDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSA 240 
WD40-rpts         (_________________WD 4________________)(_______________________WD 5__________

Query      241 HAMNNSGPTAQIIEREGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGSSAKPSCPYCCCAVGSKDRSLSVWLTCLKRPL 320 
WD40-rpts      _____________)   (_________________________WD 6_________________________)    (__

Query      321 VVIHELFDKSIMDISWTLNGLGILVCSMDGSVAFLDFSQDELGDPLSEEEKSRIHQSTYGKSLAIMTEAQLSTAVIENPE 400 
WD40-rpts      _______________WD 7________________)                                            

Query      401 MLKYQRRQQQQQLDQKSAATREMGSATSVAGVVNGESLEDIRKNLLKKQVETRTADGRRRITPLCIAQLDTGDFSTAFFN 480 
WD40-rpts            (_________________WD 8________________)   (________________WD 9___________

Query      481 SIPLSGSLAGTMLSSHSSPQLLPLDSSTPNSFGASKPCTEPVVAASARPAGDSVNKDSMNATSTPAALSPSVLTTPSKIE 560 
WD40-rpts      _____)                                           (_________________WD10_________

Query      561 PMKAFDSRFTERSKATPGAPALTSMTPTAVERLKEQNLVKELRPRDLLESSSDSDEKVPLAKASSLSKRKLELEVETVEK 640 
WD40-rpts      _______)                                                                        

Query      641 KKKGRPRKDSRLMPVSLSVQSPAALTAEKEAMCLSAPALALKLPIPSPQRAFTLQVSSDPSMYIEVENEVTVVGGVKLSR 720 
WD40-rpts                                                                                      

Query      721 LKCNREGKEWETVLTSRILTAAGSCDVVCVACEKRMLSVFSTCGRRLLSPILLPSPISTLHCTGSYVMALTAAATLSVWD 800 
WD40-rpts         (________________WD11________________)(_________________WD12________________)

Query      801 VHRQVVVVKEESLHSILAGSDMTVSQILLTQHGIPVMNLSDGKAYCFNPSLSTWNLVSDKQDSLAQCADFRSSLPSQDAM 880 
WD40-rpts               (_________________WD13_________________)                               

Query      881 LCSGPLAIIQGRTSNSGRQAARLFSVPHVVQQETTLAYLENQVAAALTLQSSHEYRHWLLVYARYLVNEGFEYRLREICK 960 
WD40-rpts                                                                                      

Query      961 DLLGPVHYSTGSQWESTVVGLRKRELLKELLPVIGQNLRFQRLFTECQEQLDILRDK 1017
WD40-rpts                                                               



13 WD40-repeats found in QUERY=ENSP00000263208 (Len=1017):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-44       5.47  340.50  0.00160       22.5%     42.53
  WD 2:  Seg  4    60-98       7.84  438.46  7.7e-05       32.5%     53.45
  WD 3:  Seg  8   121-159      7.78  436.07  8.3e-05       32.5%     54.65
  WD 4:  Seg 12   164-202      9.20  494.87  1.3e-05       37.5%     57.24
  WD 5:  Seg 16   203-254      4.77  311.61  0.00393       35.0%     50.68
  WD 6:  Seg 20   258-313      5.86  356.84  0.00097       30.0%     57.72
  WD 7:  Seg 24   318-356      6.76  394.06  0.00030       15.0%     57.22
  WD 8:  Seg 30   407-445      4.87  315.63  0.00347       10.0%     18.09
  WD 9:  Seg 31   449-486      4.15  286.06  0.00866       15.0%     22.63
  WD10:  Seg 34   530-568      2.80  230.50  0.04766       12.5%     -5.91
  WD11:  Seg 39   724-761      3.19  246.24  0.02951       12.5%     43.20
  WD12:  Seg 43   762-800      5.32  334.53  0.00193       22.5%     34.24
  WD13:  Seg 47   810-849      4.32  293.22  0.00694       12.5%     41.92
Multiple sequence alignment of 13 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    7-44     TW-----VN--------HNGKPIFSVDIHPD-----------------GTKFATGGQGQD----SGKVVIWN
   WD 2   60-98     -PKMLCQMD--------NHLACVNCVRWSNS-----------------GMYLASGG---D----DKLIMVWK
   WD 3  121-159    -WRCVSILR--------NHSGDVMDVAWSPH-----------------DAWLASCS---V----DNTVVIWN
   WD 4  164-202    -PEILATLR--------GHSGLVKGLTWDPV-----------------GKYIASQA---D----DRSLKVWR
   WD 5  203-254    TLDWQLETSITKPFDECGGTTHVLRLSWSPD-----------------GHYLVSAH---AMNNSGPTAQIIE
   WD 6  258-313    -WKTNMDFV--------GHRKAVTVVKFNPKIFKKKQKNGSSAKPSCPYCCCAVGS---K----DRSLSVWL
   WD 7  318-356    -RPLVVIHE--------LFDKSIMDISWTLN-----------------GLGILVCS---M----DGSVAFLD
   WD 8  407-445    -RQQQQQLD--------QKSAATREMGSATS-----------------VAGVVNGE---S----LEDIRKNL
   WD 9  449-486    -QVETRTAD--------GRRR-ITPLCIAQL-----------------DTGDFSTA---F----FNSIPLSG
   WD10  530-568    -AGDSVNKD--------SMNATSTPAALSPS-----------------VLTTPSKI---E----PMKAFDSR
   WD11  724-761    NREGKEWET--------VLTSRI--LTAAGS-----------------CDVVCVAC---E----KRMLSVFS
   WD12  762-800    T-CGRRLLS--------PILLPSPISTLHCT-----------------GSYVMALT---A----AATLSVWD
   WD13  810-849    EESLHSILA--------GSDMTVSQILLTQH-----------------GIPVMNLS---D----GKAYCFNP

   WD40 Template    TGECLRTLS--------GHTSGVTSVSFSPD-----------------GKRLVSGS---E----DGTIKVWD


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Last modified: 09 Jan 2019