WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000263280    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000263280 (Len=753)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000263280, Len=753):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMEERAAAAVAAAASSCRPLGSGAGPGPTGAAPVSAPAPGPGPAGKGGGGGGSPGPTAGPEPLSLPGILHFIQHEWARFE 80  
WD40-rpts                                                                                      

Query       81 AEKARWEAERAELQAQVAFLQGERKGQENLKTDLVRRIKMLEYALKQERAKYHKLKFGTDLNQGEKKADVSEQVSNGPVE 160 
WD40-rpts                                                                                      

Query      161 SVTLENSPLVWKEGRQLLRQYLEEVGYTDTILDMRSKRVRSLLGRSLELNGAVEPSEGAPRAPPGPAGLSGGESLLVKQI 240 
WD40-rpts                                                                                      

Query      241 EEQIKRNAAGKDGKERLGGSVLGQIPFLQNCEDEDSDEDDELDSVQHKKQRVKLPSKALVPEMEDEDEEDDSEDAINEFD 320 
WD40-rpts                                                                                      

Query      321 FLGSGEDGEGAPDPRRCTVDGSPHELESRRVKLQGILADLRDVDGLPPKVTGPPPGTPQPRPHEDVFIMDTIGGGEVSLG 400 
WD40-rpts                                         (_______________WD 1______________)(_________

Query      401 DLADLTVTNDNDLSCDLSDSKDAFKKTWNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALD 480 
WD40-rpts      ________WD 2________________)(________________WD 3_______________)              

Query      481 VEPIHAFRAHRGPVLAVAMGSNSEYCYSGGADACIHSWKIPDLSMDPYDGYDPSVLSHVLEGHGDAVWGLAFSPTSQRLA 560 
WD40-rpts      (_________________WD 4________________)              (_________________WD 5_____

Query      561 SCSADGTVRIWDPSSSSPACLCTFPTASEHGVPTSVAFTSTEPAHIVASFRSGDTVLYDMEVGSALLTLESRGSSGPTQI 640 
WD40-rpts      ___________)(_____________________WD 6____________________)   (_________________

Query      641 NQVVSHPNQPLTITAHDDRGIRFLDNRTGKPVHSMVAHLDAVTCLAVDPNGAFLMSGSHDCSLRLWSLDNKTCVQEITAH 720 
WD40-rpts      __WD 7__________________)   (_________________WD 8________________)(____________

Query      721 RKKHEEAIHAVACHPSKALIASAGADALAKVFV 753 
WD40-rpts      ________WD 9____________________)



9 WD40-repeats found in QUERY=ENSP00000263280 (Len=753):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   356-390      3.65  265.34  0.01642       15.0%      0.67
  WD 2:  Seg  2   391-429      6.43  380.45  0.00046       22.5%     32.43
  WD 3:  Seg  6   430-466      9.25  496.55  1.3e-05       35.0%     46.23
  WD 4:  Seg  9   481-519      7.91  441.38  7.0e-05       22.5%     47.02
  WD 5:  Seg 12   534-572      9.43  504.38  9.9e-06       40.0%     48.33
  WD 6:  Seg 16   573-619      5.82  354.87  0.00103       22.5%     48.07
  WD 7:  Seg 20   623-665      6.95  401.80  0.00024       25.0%     57.30
  WD 8:  Seg 24   669-707      9.77  518.12  6.5e-06       30.0%     54.87
  WD 9:  Seg 28   708-753      6.52  384.03  0.00042       20.0%     46.05
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  356-390    ---------------ILADLRDVDGL----PPKVTG-PPPGTPQPRP--HEDVFIMD
   WD 2  391-429    T-------I------GGGEVSLGDLA----DLTVTN-DNDLSCDLSDSKDAFKKTWN
   WD 3  430-466    ---------------PKFTLRSHYDG----IRSLAF-HHSQSALLTASEDGTLKLWN
   WD 4  481-519    -V------E------PIHAFRAHRGP----VLAVAM-GSNSEYCYSGGADACIHSWK
   WD 5  534-572    -S------V------LSHVLEGHGDA----VWGLAF-SPTSQRLASCSADGTVRIWD
   WD 6  573-619    PS------SSSPACLCTFPTASEHGV----PTSVAFTSTEPAHIVASFRSGDTVLYD
   WD 7  623-665    -G------S------ALLTLESRGSSGPTQINQVVS-HPNQPLTITAHDDRGIRFLD
   WD 8  669-707    -G------K------PVHSMVAHLDA----VTCLAV-DPNGAFLMSGSHDCSLRLWS
   WD 9  708-753    LDNKTCVQE------ITAHRKKHEEA----IHAVAC-HPSKALIASAGADALAKVFV

   WD40 Template    TG------E------CLRTLSGHTSG----VTSVSF-SPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019