WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000263461    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000263461 (Len=1224)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000263461, Len=1224):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKHKADVVKVKWARENYHHNIGS 80  
WD40-rpts                (________________WD 1_______________)   (______________________WD 2___

Query       81 PYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKPIQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADN 160 
WD40-rpts      __________________)   (___________________WD 3__________________)(______________

Query      161 ILSFSFDPFDPSHLTLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATGAKKALNKVKILITQEKPSAE 240 
WD40-rpts      ____WD 4__________________)(___________________WD 5__________________)   (______

Query      241 FITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCFQRDGLFCLHENGCITLRVRRSY 320 
WD40-rpts      ___________WD 6________________)   (__________________WD 7_________________)    

Query      321 NNIFTTSNEEPDPDPVQELTYDLRSQCDAIRVTKTVRPFSMVCCPVNENAAALVVSDGRVMIWELKSAVCNRNSRNSSSG 400 
WD40-rpts                               (_________________WD 8________________)   (____________

Query      401 VSPLYSPVSFCGIPVGVLQNKLPDLSLDNMIGQSAIAGEEHPRGSILREVHLKFLLTGLLSGLPAPQFAIRMCPPLTTKN 480 
WD40-rpts      _____WD 9________________)                                  (__________________W

Query      481 IKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLSFATSTPNNMGLVRNELQLVDLPTGRSIAF 560 
WD40-rpts      D10_________________)   (_____________________WD11____________________)         

Query      561 RGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDVRTCTLLREMSKNFPTITALEWSPSHNLKSLRKKQLATREAMAR 640 
WD40-rpts      (_______________WD12_______________)   (_________________WD13________________)  

Query      641 QTVVSDTELSIVESSVISLLQEAESKSELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPPDGSMGSITCIAWKG 720 
WD40-rpts          (_______________WD14______________)              (___________________WD15___

Query      721 DTLVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILD 800 
WD40-rpts      _______________)  (_________________WD16_________________)   (__________________

Query      801 VDWCTSDKVILASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSLDISHVDYPEN 880 
WD40-rpts      WD17_________________)                                                          

Query      881 EEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWTVAAHYLHSLSQEKSASTTAPKEAAPRDKLS 960 
WD40-rpts                                             (________________________WD18____________

Query      961 NPLDICYDVLCENAYFQKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTV 1040
WD40-rpts      ___________)                                                                    

Query     1041 TSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQ 1120
WD40-rpts                                                                                      

Query     1121 VNQKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVTEDTEKLITAIYADYARSLKNLGFKQGAVLFA 1200
WD40-rpts                                                                                      

Query     1201 SKAGAAGKDLLNELESPKEEPIEE 1224
WD40-rpts                              



18 WD40-repeats found in QUERY=ENSP00000263461 (Len=1224):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-47       2.81  230.81  0.04721       17.5%     44.01
  WD 2:  Seg  6    51-99       6.83  396.69  0.00028       32.5%     50.55
  WD 3:  Seg 10   103-145      5.43  338.96  0.00168       15.0%     56.07
  WD 4:  Seg 14   146-187      5.11  325.77  0.00253       20.0%     51.84
  WD 5:  Seg 18   188-230      4.43  297.64  0.00605       20.0%     31.12
  WD 6:  Seg 21   234-272      6.19  370.49  0.00063       10.0%     46.19
  WD 7:  Seg 24   276-316      3.65  265.32  0.01643       20.0%     44.29
  WD 8:  Seg 29   346-384      5.40  337.69  0.00175       10.0%     53.05
  WD 9:  Seg 32   388-426      4.74  310.47  0.00407       15.0%      2.86
  WD10:  Seg 34   461-501      4.02  280.90  0.01016       15.0%     27.99
  WD11:  Seg 37   505-551      5.65  347.99  0.00127       17.5%     56.05
  WD12:  Seg 42   561-596      6.89  399.11  0.00026       20.0%     48.63
  WD13:  Seg 45   600-638      4.04  281.72  0.00991       15.0%     45.92
  WD14:  Seg 49   645-679      3.25  248.97  0.02715        7.5%     27.09
  WD15:  Seg 53   694-736      6.00  362.65  0.00081       25.0%     50.24
  WD16:  Seg 57   739-778      7.20  412.21  0.00017       27.5%     54.96
  WD17:  Seg 61   782-822      4.80  312.77  0.00379       20.0%     41.62
  WD18:  Seg 69   920-972      3.30  251.06  0.02546       12.5%      7.79
Multiple sequence alignment of 18 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   11-47     SAR----TL--T---GALN---------AH---N-KAAVDWGW----QG--------------LI--AYGCHSL--------VVVID
   WD 2   51-99     -AQ----TL-QV---LEKH---------KA---D-VVKVKWAR----ENYHHNIGSPYCLR--LA--SADVNGK--------IIVWD
   WD 3  103-145    -GV----AQ-CE---IQEH---------AK---P-IQDVQWLWNQDASR----------DL--LL--AIHPPNY--------IVLWN
   WD 4  146-187    ADT----GT-KL--WKKSY---------AD---N-ILSFSFDP---FDP----------SH--LT--LLTSEGI--------VFISD
   WD 5  188-230    FSP----SKPPS---GPGK---------KV---Y-ISSPHSSP----AH----------NK--LATATGAKKAL--------NKVKI
   WD 6  234-272    -QE----KP-SA---EFIT---------LN---D-CLQLAYLP----SK----------RN--HM--LLLYPRE--------ILILD
   WD 7  276-316    -NQ----TV-GV---IAIE---------RT---G-VPFLQVIP----CF----------QRDGLF--CLHENGC--------ITLRV
   WD 8  346-384    -QC----DA-IR---VTKT---------VR---P-FSMVCCPV----NE----------NA--AA--LVVSDGR--------VMIWE
   WD 9  388-426    -AV----CN-RN---SRNS---------SS---G-VSPLYSPV----SF----------CG--IP--VGVLQNK--------LPDLS
   WD10  461-501    SGL----PA-PQ---FAIR---------MC---PPLTTKNIKM----YQ----------PL--LA--VGTSNGS--------VLVYH
   WD11  505-551    -GL----LH-KE---LSIH---------SC---E-VKGIEWTS----LT----------SF--LS--FATSTPNNMGLVRNELQLVD
   WD12  561-596    RGE------------RGND---------ES---A-IEMIKVSH----LK----------QY--LA--VVFRDKP--------LELWD
   WD13  600-638    -CT----LL-RE---MSKN---------FP---T-ITALEWSP----SH----------NL--KS--LRKKQLA--------TREAM
   WD14  645-679    SDT----EL-SI---VES------------------SVISLLQ----EA----------ES--KS--ELSQNIS--------AREHF
   WD15  694-736    EGN----SV-KDSARIPPD---------GS---M-GSITCIAW----KG----------DT--LV--LGDMDGN--------LNFWD
   WD16  739-778    -GR----VS-RG---IPTH---------RS---W-VRKIRFAP---GKG----------NQ--KL--IAMYNDG--------AEVWD
   WD17  782-822    -VQ----MV-SS---LRSG---------RNVTFR-ILDVDWCT----SD----------K---VI--LASDDGC--------IRVLE
   WD18  920-972    YGDESELHF-WT---VAAHYLHSLSQEKSA---S-TTAPKEAA----PR----------DK--LS--NPLDICY--------DVLCE

   WD40 Template    TGE----CL-RT---LSGH---------TS---G-VTSVSFSP----DG----------KR--LV--SGSEDGT--------IKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019