Input parameters:
Query = ENSP00000263461 (Len=1224)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000263461, Len=1224):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKHKADVVKVKWARENYHHNIGS 80
WD40-rpts (________________WD 1_______________) (______________________WD 2___
Query 81 PYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKPIQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADN 160
WD40-rpts __________________) (___________________WD 3__________________)(______________
Query 161 ILSFSFDPFDPSHLTLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATGAKKALNKVKILITQEKPSAE 240
WD40-rpts ____WD 4__________________)(___________________WD 5__________________) (______
Query 241 FITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCFQRDGLFCLHENGCITLRVRRSY 320
WD40-rpts ___________WD 6________________) (__________________WD 7_________________)
Query 321 NNIFTTSNEEPDPDPVQELTYDLRSQCDAIRVTKTVRPFSMVCCPVNENAAALVVSDGRVMIWELKSAVCNRNSRNSSSG 400
WD40-rpts (_________________WD 8________________) (____________
Query 401 VSPLYSPVSFCGIPVGVLQNKLPDLSLDNMIGQSAIAGEEHPRGSILREVHLKFLLTGLLSGLPAPQFAIRMCPPLTTKN 480
WD40-rpts _____WD 9________________) (__________________W
Query 481 IKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLSFATSTPNNMGLVRNELQLVDLPTGRSIAF 560
WD40-rpts D10_________________) (_____________________WD11____________________)
Query 561 RGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDVRTCTLLREMSKNFPTITALEWSPSHNLKSLRKKQLATREAMAR 640
WD40-rpts (_______________WD12_______________) (_________________WD13________________)
Query 641 QTVVSDTELSIVESSVISLLQEAESKSELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPPDGSMGSITCIAWKG 720
WD40-rpts (_______________WD14______________) (___________________WD15___
Query 721 DTLVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILD 800
WD40-rpts _______________) (_________________WD16_________________) (__________________
Query 801 VDWCTSDKVILASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSLDISHVDYPEN 880
WD40-rpts WD17_________________)
Query 881 EEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWTVAAHYLHSLSQEKSASTTAPKEAAPRDKLS 960
WD40-rpts (________________________WD18____________
Query 961 NPLDICYDVLCENAYFQKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTV 1040
WD40-rpts ___________)
Query 1041 TSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQ 1120
WD40-rpts
Query 1121 VNQKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVTEDTEKLITAIYADYARSLKNLGFKQGAVLFA 1200
WD40-rpts
Query 1201 SKAGAAGKDLLNELESPKEEPIEE 1224
WD40-rpts
18 WD40-repeats found in QUERY=ENSP00000263461 (Len=1224):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 11-47 2.81 230.81 0.04721 17.5% 44.01
WD 2: Seg 6 51-99 6.83 396.69 0.00028 32.5% 50.55
WD 3: Seg 10 103-145 5.43 338.96 0.00168 15.0% 56.07
WD 4: Seg 14 146-187 5.11 325.77 0.00253 20.0% 51.84
WD 5: Seg 18 188-230 4.43 297.64 0.00605 20.0% 31.12
WD 6: Seg 21 234-272 6.19 370.49 0.00063 10.0% 46.19
WD 7: Seg 24 276-316 3.65 265.32 0.01643 20.0% 44.29
WD 8: Seg 29 346-384 5.40 337.69 0.00175 10.0% 53.05
WD 9: Seg 32 388-426 4.74 310.47 0.00407 15.0% 2.86
WD10: Seg 34 461-501 4.02 280.90 0.01016 15.0% 27.99
WD11: Seg 37 505-551 5.65 347.99 0.00127 17.5% 56.05
WD12: Seg 42 561-596 6.89 399.11 0.00026 20.0% 48.63
WD13: Seg 45 600-638 4.04 281.72 0.00991 15.0% 45.92
WD14: Seg 49 645-679 3.25 248.97 0.02715 7.5% 27.09
WD15: Seg 53 694-736 6.00 362.65 0.00081 25.0% 50.24
WD16: Seg 57 739-778 7.20 412.21 0.00017 27.5% 54.96
WD17: Seg 61 782-822 4.80 312.77 0.00379 20.0% 41.62
WD18: Seg 69 920-972 3.30 251.06 0.02546 12.5% 7.79
Multiple sequence alignment of 18 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 11-47 SAR----TL--T---GALN---------AH---N-KAAVDWGW----QG--------------LI--AYGCHSL--------VVVID
WD 2 51-99 -AQ----TL-QV---LEKH---------KA---D-VVKVKWAR----ENYHHNIGSPYCLR--LA--SADVNGK--------IIVWD
WD 3 103-145 -GV----AQ-CE---IQEH---------AK---P-IQDVQWLWNQDASR----------DL--LL--AIHPPNY--------IVLWN
WD 4 146-187 ADT----GT-KL--WKKSY---------AD---N-ILSFSFDP---FDP----------SH--LT--LLTSEGI--------VFISD
WD 5 188-230 FSP----SKPPS---GPGK---------KV---Y-ISSPHSSP----AH----------NK--LATATGAKKAL--------NKVKI
WD 6 234-272 -QE----KP-SA---EFIT---------LN---D-CLQLAYLP----SK----------RN--HM--LLLYPRE--------ILILD
WD 7 276-316 -NQ----TV-GV---IAIE---------RT---G-VPFLQVIP----CF----------QRDGLF--CLHENGC--------ITLRV
WD 8 346-384 -QC----DA-IR---VTKT---------VR---P-FSMVCCPV----NE----------NA--AA--LVVSDGR--------VMIWE
WD 9 388-426 -AV----CN-RN---SRNS---------SS---G-VSPLYSPV----SF----------CG--IP--VGVLQNK--------LPDLS
WD10 461-501 SGL----PA-PQ---FAIR---------MC---PPLTTKNIKM----YQ----------PL--LA--VGTSNGS--------VLVYH
WD11 505-551 -GL----LH-KE---LSIH---------SC---E-VKGIEWTS----LT----------SF--LS--FATSTPNNMGLVRNELQLVD
WD12 561-596 RGE------------RGND---------ES---A-IEMIKVSH----LK----------QY--LA--VVFRDKP--------LELWD
WD13 600-638 -CT----LL-RE---MSKN---------FP---T-ITALEWSP----SH----------NL--KS--LRKKQLA--------TREAM
WD14 645-679 SDT----EL-SI---VES------------------SVISLLQ----EA----------ES--KS--ELSQNIS--------AREHF
WD15 694-736 EGN----SV-KDSARIPPD---------GS---M-GSITCIAW----KG----------DT--LV--LGDMDGN--------LNFWD
WD16 739-778 -GR----VS-RG---IPTH---------RS---W-VRKIRFAP---GKG----------NQ--KL--IAMYNDG--------AEVWD
WD17 782-822 -VQ----MV-SS---LRSG---------RNVTFR-ILDVDWCT----SD----------K---VI--LASDDGC--------IRVLE
WD18 920-972 YGDESELHF-WT---VAAHYLHSLSQEKSA---S-TTAPKEAA----PR----------DK--LS--NPLDICY--------DVLCE
WD40 Template TGE----CL-RT---LSGH---------TS---G-VTSVSFSP----DG----------KR--LV--SGSEDGT--------IKVWD