Input parameters:
Query = ENSP00000263836 (Len=194)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000263836, Len=194):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 TTQSSEVYRLNLEQGRYLNPLQTDAAENNVCDINSVHGLFATGTIEGRVECWDPRTRNRVGLLDCALNSVTADSEINSLP 80
WD40-rpts (_________________WD 1________________) (______________________W
Query 81 TISALKFNGALTMAVGTTTGQVLLYDLRSDKPLLVKDHQYGLPIKSVHFQDSLDLILSADSRIVKMWNKNSGKIFTSLEP 160
WD40-rpts D 2______________________)(__________________WD 3__________________)(___________
Query 161 EHDLNDVCLYPNSGMLLTANETPKMGIYYIPPSI 194
WD40-rpts _______WD 4_________________)
4 WD40-repeats found in QUERY=ENSP00000263836 (Len=194):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 15-53 8.73 475.12 2.5e-05 17.5% 56.56
WD 2: Seg 6 57-106 6.11 367.20 0.00070 17.5% 41.49
WD 3: Seg 10 107-148 5.61 346.58 0.00133 17.5% 52.44
WD 4: Seg 14 149-189 6.92 400.58 0.00025 12.5% 56.46
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 15-53 -GR---YLNPLQTDAAENNVCDINS-----------VHGLFATGTIEGRVECWD
WD 2 57-106 -RN---RVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQVLLYD
WD 3 107-148 LRSDKPLLVKDHQYGLPIKSVHFQD-----------SLDLILSAD-SRIVKMWN
WD 4 149-189 KNS--GKIFTSLEPEHDLNDVCLYP-----------NSGMLLTANETPKMGIYY
WD40 Template TGE---CLRTLSGHTSGVTSVSFSP-----------DGKRLVSGSEDGTIKVWD