WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000263836    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000263836 (Len=194)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000263836, Len=194):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 TTQSSEVYRLNLEQGRYLNPLQTDAAENNVCDINSVHGLFATGTIEGRVECWDPRTRNRVGLLDCALNSVTADSEINSLP 80  
WD40-rpts                    (_________________WD 1________________)   (______________________W

Query       81 TISALKFNGALTMAVGTTTGQVLLYDLRSDKPLLVKDHQYGLPIKSVHFQDSLDLILSADSRIVKMWNKNSGKIFTSLEP 160 
WD40-rpts      D 2______________________)(__________________WD 3__________________)(___________

Query      161 EHDLNDVCLYPNSGMLLTANETPKMGIYYIPPSI 194 
WD40-rpts      _______WD 4_________________)     



4 WD40-repeats found in QUERY=ENSP00000263836 (Len=194):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       8.73  475.12  2.5e-05       17.5%     56.56
  WD 2:  Seg  6    57-106      6.11  367.20  0.00070       17.5%     41.49
  WD 3:  Seg 10   107-148      5.61  346.58  0.00133       17.5%     52.44
  WD 4:  Seg 14   149-189      6.92  400.58  0.00025       12.5%     56.46
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   15-53     -GR---YLNPLQTDAAENNVCDINS-----------VHGLFATGTIEGRVECWD
   WD 2   57-106    -RN---RVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQVLLYD
   WD 3  107-148    LRSDKPLLVKDHQYGLPIKSVHFQD-----------SLDLILSAD-SRIVKMWN
   WD 4  149-189    KNS--GKIFTSLEPEHDLNDVCLYP-----------NSGMLLTANETPKMGIYY

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP-----------DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019