WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000264515    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000264515 (Len=538)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000264515, Len=538):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHK 80  
WD40-rpts            (____________________WD 1____________________)   (_________________WD 2___

Query       81 LVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFD 160 
WD40-rpts      _____________)   (_________________WD 3_________________)   (_________________WD

Query      161 RRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE 240 
WD40-rpts       4________________)(_____________________WD 5____________________)(_____________

Query      241 PMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSI 320 
WD40-rpts      ___________WD 6________________________)   (_________________WD 7_______________

Query      321 WAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALL 400 
WD40-rpts      _)(______________WD 8______________)      (_________________WD 9________________

Query      401 YLPIAPEVEDPEENPYGPPPDAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSK 480 
WD40-rpts      )   (_________________WD10________________)                                     

Query      481 KKQAGRPKGSKGKEKDSPFKPKLYKGDRGLPLEGSAKGKVQAELSQPLTAGGAISELL 538 
WD40-rpts                                                                



10 WD40-repeats found in QUERY=ENSP00000264515 (Len=538):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-52       7.21  412.44  0.00017       27.5%     46.12
  WD 2:  Seg  5    56-94       9.82  520.27  6.0e-06       35.0%     53.53
  WD 3:  Seg  9    98-137      5.84  355.86  0.00100       20.0%     51.20
  WD 4:  Seg 13   141-179      8.39  461.25  3.8e-05       17.5%     56.56
  WD 5:  Seg 17   180-226      8.28  456.64  4.4e-05       25.0%     47.42
  WD 6:  Seg 21   227-280      4.81  313.45  0.00371       25.0%     48.73
  WD 7:  Seg 25   284-322      6.36  377.50  0.00051       22.5%     54.03
  WD 8:  Seg 29   323-356      2.81  230.55  0.04758       15.0%     27.21
  WD 9:  Seg 32   363-401      3.79  271.21  0.01370       15.0%     19.87
  WD10:  Seg 35   405-443      4.61  305.16  0.00480       10.0%     -24.45
Multiple sequence alignment of 10 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    7-52     ESFGQNYPE-------EAD-------------GTLDCISM-ALTCTFNRWG--TLL----AVGC-N-DGRIVIWD
   WD 2   56-94     -R------G-------IAK-------------IISAHIHP-VCSLCWSRDG--HKL----VSAS-T-DNIVSQWD
   WD 3   98-137    -G------D-------CDQ-------------RFRFP-SP-ILKVQYHPRDQNKVL----VCPM-K-SAPVMLTL
   WD 4  141-179    -K------H-------VVL-------------PVDDDSDL-NVVASFDRRG--EYI----YTGN-A-KGKILVLK
   WD 5  180-226    TD------SQDLVASFRVT-------------TGTSNTTA-IKSIEFARKG--SCF----LINT-A-DRIIRVYD
   WD 6  227-280    GR------E-------ILTCGRDGEPEPMQKLQDLVNRTP-WKKCCFSGDG--EYI----VAGSAR-QHALYIWE
   WD 7  284-322    -G------N-------LVK-------------ILHGTRGELLLDVAWHPVR--PII----ASIS---SGVVSIWA
   WD 8  323-356    ------------------------------------QNQV-ENWSAFAPDF--KELDENVEYEE-R-ESEFDIED
   WD 9  363-401    --------E-------QTG-------------ADAAEDEE-VDVTSVDPIA--AFC----SSDE-ELEDSKALLY
   WD10  405-443    -A------P-------EVE-------------DPEENPYG-PPPDAVQTSL--MDE----GASS-E-KKRQSSAD

   WD40 Template    TG------E-------CLR-------------TLSGHTSG-VTSVSFSPDG--KRL----VSGS-E-DGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019