WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000265565    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000265565 (Len=1279)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000265565, Len=1279):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTLTERLREKISRAFYNHGLLCASYPIPIILFTGFCILACCYPLLKLPLPGTGPVEFTTPVKDYSPPPVDSDRKQGEPTE 80  
WD40-rpts                                                                                      

Query       81 QPEWYVGAPVAYVQQIFVKSSVFPWHKNLLAVDVFRSPLSRAFQLVEEIRNHVLRDSSGIRSLEELCLQVTDLLPGLRKL 160 
WD40-rpts                                                                                      

Query      161 RNLLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSGVSLYTRKRMVSYTITLVF 240 
WD40-rpts                                                                                      

Query      241 QHYHAKFLGSLRARLMLLHPSPNCSLRAESLVHVHFKEEIGVAELIPLVTTYIILFAYIYFSTRKIDMVKSKWGLALAAV 320 
WD40-rpts                                                                                      

Query      321 VTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATEL 400 
WD40-rpts                                                                                      

Query      401 GIILIGYFTLVPAIQEFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACLPSAKPVGQPTRYERQLAV 480 
WD40-rpts                                                                                      

Query      481 RPSTPHTITLQPSSFRNLRLPKRLRVVYFLARTRLAQRLIMAGTVVWIGILVYTDPAGLRNYLAAQVTEQSPLGEGALAP 560 
WD40-rpts                                                                                      

Query      561 MPVPSGMLPPSHPDPAFSIFPPDAPKLPENQTSPGESPERGGPAEVVHDSPVPEVTWGPEDEELWRKLSFRHWPTLFSYY 640 
WD40-rpts                                                                                      

Query      641 NITLAKRYISLLPVIPVTLRLNPREALEGRHPQDGRSAWPPPGPIPAGHWEAGPKGPGGVQAHGDVTLYKVAALGLATGI 720 
WD40-rpts                                                                                      

Query      721 VLVLLLLCLYRVLCPRNYGQLGGGPGRRRRGELPCDDYGYAPPETEIVPLVLRGHLMDIECLASDGMLLVSCCLAGHVCV 800 
WD40-rpts                                                           (____________WD 1__________

Query      801 WDAQTGDCLTRIPRPGRQRRDSGVGSGLEAQESWERLSDGGKAGPEEPGDSPPLRHRPRGPPPPSLFGDQPDLTCLIDTN 880 
WD40-rpts      _)                                                                           (__

Query      881 FSAQPRSSQPTQPEPRHRAVCGRSRDSPGYDFSCLVQRVYQEEGLAAVCTPALRPPSPGPVLSQAPEDEGGSPEKGSPSL 960 
WD40-rpts      ____________WD 2______________)   (_________________WD 3________________)      (

Query      961 AWAPSAEGSIWSLELQGNLIVVGRSSGRLEVWDAIEGVLCCSSEEVSSGITALVFLDKRIVAARLNGSLDFFSLETHTAL 1040
WD40-rpts      ______________WD 4______________)   (________________WD 5_______________)       

Query     1041 SPLQFRGTPGRGSSPASPVYSSSDTVACHLTHTVPCAHQKPITALKAAAGRLVTGSQDHTLRVFRLEDSCCLFTLQGHSG 1120
WD40-rpts                                    (_______________WD 6______________)   (___________

Query     1121 AITTVYIDQTMVLASGGQDGAICLWDVLTGSRVSHVFAHRGDVTSLTCTTSCVISSGLDDLISIWDRSTGIKFYSIQQDL 1200
WD40-rpts      _____WD 7________________)   (________________WD 8_______________)   (__________

Query     1201 GCGASLGVISDNLLVTGGQGCVSFWDLNYGDLLQTVYLGKNSEAQPARQILVLDNAAIVCNFGSELSLVYVPSVLEKLD 1279
WD40-rpts      ______WD 9_______________)   (___________________WD10___________________)      



10 WD40-repeats found in QUERY=ENSP00000265565 (Len=1279):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   774-802      4.73  310.05  0.00412       27.5%     38.16
  WD 2:  Seg 19   878-911      2.97  237.35  0.03870        7.5%      2.83
  WD 3:  Seg 20   915-953      3.85  273.57  0.01274        7.5%     16.11
  WD 4:  Seg 21   960-993      5.48  340.98  0.00158       22.5%     45.88
  WD 5:  Seg 24   997-1033     5.66  348.41  0.00125       22.5%     53.92
  WD 6:  Seg 30  1071-1105     5.58  345.29  0.00138       27.5%     35.59
  WD 7:  Seg 33  1109-1146     8.19  452.89  4.9e-05       40.0%     53.97
  WD 8:  Seg 37  1150-1186     6.81  396.01  0.00029       25.0%     51.54
  WD 9:  Seg 41  1190-1226     5.04  322.80  0.00278       17.5%     52.52
  WD10:  Seg 45  1230-1273     2.88  233.67  0.04329       17.5%     23.02
Multiple sequence alignment of 10 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  774-802    ---------GHLMDIEC-----L--ASDGMLLVSCCLAGHVCVWD
   WD 2  878-911    ------DTNFSAQPRSS-----QPTQPEPRHRAVCGRSRDSPGYD
   WD 3  915-953    -LVQRVYQEEGLAAVCT-----PALRPPSPGPVLSQAPEDEGGSP
   WD 4  960-993    ----LAWAPSAEGSIWS-----LEL--QGNLIVVGRSSGRLEVWD
   WD 5  997-1033   -GVLCCSSEEVSSGITA-----LVFL--DKRIVAARLNGSLDFFS
   WD 6 1071-1105   T---HTVPCAHQKPITA-----L--KAAAGRLVTGSQDHTLRVFR
   WD 7 1109-1146   -SCCLFTLQGHSGAITT-----VYID-QTMVLASGGQDGAICLWD
   WD 8 1150-1186   -GSRVSHVFAHRGDVTS-----LTCTTS--CVISSGLDDLISIWD
   WD 9 1190-1226   -GIKFYSIQQDLGCGAS-----LGVISDN--LLVTGGQGCVSFWD
   WD10 1230-1273   -GDLLQTVYLGKNSEAQPARQILVLDNAAIVCNFGSELSLVYVPS

   WD40 Template    TGECLRTLSGHTSGVTS-----VSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019