WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000275034 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000275034 (Len=1821) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000275034, Len=1821): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSCERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTYQNLVKYYRHLAPDHLLQICH 80
WD40-rpts
Query 81 RLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCKHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYR 160
WD40-rpts (_________________WD 1________________)___________________WD 2________________
Query 161 LERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMI 240
WD40-rpts __) (_________________WD 3________________) (_________________WD 4____
Query 241 AAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRP 320
WD40-rpts ____________)(____________________WD 5____________________)(____________________
Query 321 GVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWK 400
WD40-rpts __WD 6______________________) (_______________WD 7______________)
Query 401 SILLDMATRPAGQNLQGIEDKITKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPR 480
WD40-rpts (___________________WD 8___________________) (_________________WD 9___
Query 481 VLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHS 560
WD40-rpts ______________) (___________________WD10___________________)
Query 561 DYRPLIRDANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQEI 640
WD40-rpts
Query 641 SPLDSMIQRLQQEQDLRRSGEAVISNTSRLSRGSISSTSEVHSPPNVGLRRSGQIEGVRQMHSNAPRSEIATERDLVAWS 720
WD40-rpts
Query 721 RRVVVPELSAGVASRQEEWRTAKGEEEIKTYRSEEKRKHLTVPKENKIPTVSKNHAHEHFLDLGESKKQQTNQHNYRTRS 800
WD40-rpts
Query 801 ALEETPRPSEEIENGSSSSDEGEVVAVSGGTSEEEERAWHSDGSSSDYSSDYSDWTADAGINLQPPKKVPKNKTKKAESS 880
WD40-rpts
Query 881 SDEEEESEKQKQKQIKKEKKKVNEEKDGPISPKKKKPKERKQKRLAVGELTENGLTLEEWLPSTWITDTIPRRCPFVPQM 960
WD40-rpts
Query 961 GDEVYYFRQGHEAYVEMARKNKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCCLKLAFLDPDTGKLTGGSFTM 1040
WD40-rpts
Query 1041 KYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFRSVIDDAWWFGTIESQEPLQLEYPDSLFQCYNVCWDNGDTEKMSPWDM 1120
WD40-rpts
Query 1121 ELIPNNAVFPEELGTSVPLTDGECRSLIYKPLDGEWGTNPRDEECERIVAGINQLMTLDIASAFVAPVDLQAYPMYCTVV 1200
WD40-rpts
Query 1201 AYPTDLSTIKQRLENRFYRRVSSLMWEVRYIEHNTRTFNEPGSPIVKSAKFVTDLLLHFIKDQTCYNIIPLYNSMKKKVL 1280
WD40-rpts
Query 1281 SDSEDEEKDADVPGTSTRKRKDHQPRRRLRNRAQSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTP 1360
WD40-rpts
Query 1361 MDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKR 1440
WD40-rpts
Query 1441 RKKRNRSSSVSSSAASSPERKKRILKPQLKSESSTSAFSTPTRSIPPRHNAAQINGKTESSSVVRTRSNRVVVDPVVTEQ 1520
WD40-rpts
Query 1521 PSTSSAAKTFITKANASAIPGKTILENSVKHSKALNTLSSPGQSSFSHGTRNNSAKENMEKEKPVKRKMKSSVLPKASTL 1600
WD40-rpts
Query 1601 SKSSAVIEQGDCKNNALVPGTIQVNGHGGQPSKLVKRGPGRKPKVEVNTNSGEIIHKKRGRKPKKLQYAKPEDLEQNNVH 1680
WD40-rpts
Query 1681 PIRDEVLPSSTCNFLSETNNVKEDLLQKKNRGGRKPKRKMKTQKLDADLLVPASVKVLRRSNRKKIDDPIDEEEEFEELK 1760
WD40-rpts
Query 1761 GSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSLTFGTSSRGRVRKLTEKAKANLIGW 1821
WD40-rpts
 10 WD40-repeats found in QUERY=ENSP00000275034 (Len=1821): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 83-121 3.60 263.49 0.01738 12.5% 23.63 WD 2: Seg 3 121-163 3.74 269.22 0.01457 22.5% 36.70 WD 3: Seg 6 173-211 8.17 452.22 5.0e-05 32.5% 49.91 WD 4: Seg 10 215-253 8.94 483.91 1.9e-05 30.0% 53.83 WD 5: Seg 14 254-299 7.85 438.99 7.5e-05 42.5% 54.96 WD 6: Seg 18 300-349 5.49 341.43 0.00156 25.0% 43.10 WD 7: Seg 21 359-393 8.54 467.63 3.1e-05 40.0% 48.71 WD 8: Seg 25 409-452 4.83 314.23 0.00362 22.5% 42.54 WD 9: Seg 28 456-495 7.89 440.61 7.2e-05 35.0% 52.44 WD10: Seg 32 499-542 4.49 300.28 0.00558 22.5% 50.73Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 83-121 GPL----------L--EQEI---PQSVP-----G-----VQTL-LGA----GRQSLLRTNKSCKHVVWK WD 2 121-163 KGS----------A--LAALHCGRPPES-----P-----VNYGSPPS----IADTLFSRKLNGKYRLER WD 3 173-211 -MK----------M--HKRI---LGHLS-----S-----VYCVTFDR----TGRRIFTGSDDCLVKIWA WD 4 215-253 -GR----------L--LATL---RGHAA-----E-----ISDMAVNY----ENTMIAAGSCDKMIRVWC WD 5 254-299 LRT----------CAPLAVL---QGHSA-----S-----ITSLQFSPLCSGSKRYLSSTGADGTICFWL WD 6 300-349 WDAGTLKINPRPAK--FTER---PRPGV-----Q-----MICSSFSA----GGMFLATGSTDHIIRVYF WD 7 359-393 -----------------SEL---EFHTD-----K-----VDSIQFSN----TSNRFVSGSRDGTARIWQ WD 8 409-452 -RP----------A--GQNL---QGIEDKITKMK-----VTMVAWDR----HDNTVITAVNNMTLKVWN WD 9 456-495 -GQ----------L--IHVL---MGHED-----E-----VFVLEPHP---FDPRVLFSAGHDGNVIVWD WD10 499-542 -GV----------K--IRSY---FNMIE-----GQGHGAVFDCKCSP----DGQHFACTDSHGHLLIFG WD40 Template TGE----------C--LRTL---SGHTS-----G-----VTSVSFSP----DGKRLVSGSEDGTIKVWD |
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