WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000280190 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000280190 (Len=1322) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000280190, Len=1322): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAWMTYISNWFEQDDWYEGLQRANMSQVRQVGLLAAGCQPWNKDVCAASGDRFAYCATLAIYIYQLDHRYNEFKLHAIMS 80
WD40-rpts (________________WD 1________________) (_______
Query 81 EHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQKVIAKLDSTKGIPASLSWCWNAEDVVAFVSHRGPLFIWTISGPD 160
WD40-rpts __________WD 2_________________) (_________________WD 3_________________)
Query 161 SGVIVHKDAHSFLSDICMFRWHTHQKGKVVFGHIDGSLSIFHPGNKNQKHVLRPESLEGTDEEDPVTALEWDPLSTDYLL 240
WD40-rpts (__________________WD 4__________________) (__________________WD 5______
Query 241 VVNLHYGIRLVDSESLSCITTFNLPSAAASVQCLAWVPSAPGMFITGDSQVGVLRIWNVSRTTPIDNLKLKKTGFHCLHV 320
WD40-rpts ___________)(____________________WD 6____________________)
Query 321 LNSPPRKKFSVQSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCK 400
WD40-rpts (__________________WD 7__________________)(___________________WD
Query 401 FKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGGLNCIAGGTSRNGAFIWNVQKGKIIQRFNEHGT 480
WD40-rpts 8___________________) (_________________WD 9_________________) (___________
Query 481 NGIFCIAWSHKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVYYVATSSDQPLK 560
WD40-rpts _______WD10_________________)(__________________WD11_________________) (____
Query 561 VFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYTQDACINILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTR 640
WD40-rpts _____________WD12_________________) (_________________WD13_________________)
Query 641 EGTCVDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCG 720
WD40-rpts (_________________WD14_________________) (________________WD15_______
Query 721 KVSRDIRQEIEKLTANSQVKKLRWFSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKGIMHLKHLIKFRTSEAQELTT 800
WD40-rpts _________) (_______________
Query 801 VKMSKFGGGIGVPAKEERLKEAAEIHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWKKLMQRRADQLIQEDKDDVI 880
WD40-rpts _____________WD16____________________________)
Query 881 PYCIAIGDVKKLVHFFMSRGQLKEALLVAQAACEGNMQPLHVSVPKGASYSDDIYKEDFNELLHKVSKELAEWYFQDGRA 960
WD40-rpts
Query 961 VLAACCHLAIDNIELAMAYLIRGNELELAVCVGTVLGESAAPATHYALELLARKCMMISVCFPCVGYSVPFCYVNRNLAA 1040
WD40-rpts
Query 1041 DLLLMIPDNELHLIKLCAFYPGCTEEINDLHDKCKLPTVEECMQLAETARADDNIFETVKYYLLSQEPEKALPIGISFVK 1120
WD40-rpts
Query 1121 EYISSSDWTLDTIYPVLDLLSYIRTEKLLLHTCTEARNELLILCGYIGALLAIRRQYQSIVPALYEYTSQLLKRREVSVP 1200
WD40-rpts
Query 1201 LKIEYLSEELDAWRACTQSTNRSLEDSPYTPPSDSQRMIYATLLKRLKEESLKGIIGPDYVTGSNLPSHSDIHISCLTGL 1280
WD40-rpts
Query 1281 KIQGPVFFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF 1322
WD40-rpts
 16 WD40-repeats found in QUERY=ENSP00000280190 (Len=1322): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 28-65 2.88 233.72 0.04322 10.0% 41.72 WD 2: Seg 5 73-112 6.48 382.42 0.00044 25.0% 49.95 WD 3: Seg 9 116-155 5.79 353.85 0.00106 15.0% 55.69 WD 4: Seg 13 161-202 4.35 294.14 0.00675 15.0% 54.84 WD 5: Seg 18 212-252 6.07 365.22 0.00074 15.0% 44.05 WD 6: Seg 21 253-298 5.86 356.65 0.00097 17.5% 51.06 WD 7: Seg 28 337-378 5.52 342.51 0.00151 17.5% 42.18 WD 8: Seg 32 379-422 7.33 417.30 0.00015 40.0% 51.65 WD 9: Seg 36 426-465 6.32 375.83 0.00054 20.0% 56.80 WD10: Seg 40 469-509 5.67 348.83 0.00124 27.5% 54.17 WD11: Seg 44 510-550 6.62 388.30 0.00036 20.0% 55.01 WD12: Seg 48 556-595 8.26 455.86 4.5e-05 45.0% 51.51 WD13: Seg 52 599-638 8.02 445.75 6.1e-05 42.5% 54.32 WD14: Seg 56 642-681 7.46 422.65 0.00013 27.5% 53.66 WD15: Seg 61 693-730 3.71 267.97 0.01514 15.0% 37.10 WD16: Seg 68 785-846 3.68 266.62 0.01578 17.5% 26.34Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 28-65 -VR----QVGL--LAAG-CQPWNKDVC---A-A-S--G-D-RFAYCAT-------------L-A----------IYIYQ WD 2 73-112 -FK----LHAI--MSEH-KKTITAISW---C-PHN--P-D-LFASGST-------------DNL----------VIIWN WD 3 116-155 -QK----VIAK--LDST-KGIPASLSW---C-W-N--A-EDVVAFVSH-------------RGP----------LFIWT WD 4 161-202 -SG----VIVH--KDAH-SFLSDICMFRWHT-H-Q--K-G-KVVFGHI-------------DGS----------LSIFH WD 5 212-252 LRP----ESLE--GTDE-EDPVTALEW---D-PLS--T-D-YLLVVNL-------------HYG----------IRLVD WD 6 253-298 SESLSCITTFN--LPSA-AASVQCLAW---V-P-SAPG-M-FITGDSQ-------------VGV----------LRIWN WD 7 337-378 NHY----TSSTSEAVPP-PTLTQNQAF---S-L-P--P-G-HAVCCFL-------------DGG----------VGLYD WD 8 379-422 MGA-KKWDFLR--DLGH-VETIFDCKF---K-P-D--DPN-LLATASF-------------DGT----------IKVWD WD 9 426-465 -LT----AVYT--SPGN-EGVIYSLSW---A-P-G--GLN-CIAGGTS-------------RNG----------AFIWN WD10 469-509 -GK----IIQR--FNEHGTNGIFCIAW---SHK-D--S-K-RIATCSS-------------DGF----------CIIRT WD11 510-550 IDG----KVLH--KYKH-PAAVFGCDW---S-Q-N--N-KDMIATGCE-------------DTN----------VRVYY WD12 556-595 -DQ----PLKV--FSGH-TAKVFHVKW---S-P-L--R-EGILCSGSD-------------DGT----------VRIWD WD13 599-638 -DA----CINI--LNGH-TAPVRGLMW---N-T-E-IP-Y-LLISGSW-------------DYT----------IKVWD WD14 642-681 -GT----CVDT--VYDH-GADVYGLTC---H-P-S--R-PFTMASCSR-------------DST----------VRLWS WD15 693-730 I------LADR--SWEE-IIGNTDYAI---E-P-G--T-P-PLLCGKV-------------SRD----------IRQEI WD16 785-846 -KH----LIKF--RTSE-AQELTTVKM---S-K-F--G-G-GIGVPAKEERLKEAAEIHLRLGQIQRYCELMVELGEWD WD40 Template TGE----CLRT--LSGH-TSGVTSVSF---S-P-D--G-K-RLVSGSE-------------DGT----------IKVWD |
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