WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000285873 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000285873 (Len=1508) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000285873, Len=1508): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGQEPRTLPPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIGELVGHTERVSGFTFSHHPGQYN 80
WD40-rpts (_________________WD 1_________________) (__________________WD 2____
Query 81 LCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPRVKDLIVSGDEKGVVFCYWFNRNDSQHLFIEPRTIFCLTCS 160
WD40-rpts ______________) (_________________WD 3________________) (_________________WD
Query 161 PHHEDLVAIGYKDGIVVIIDISKKGEVIHRLRGHDDEIHSIAWCPLPGEDCLSINQEETSEEAEITNGNAVAQAPVTKGC 240
WD40-rpts 4_________________) (_________________WD 5_________________)(_____________WD
Query 241 YLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPTVKERLWLTLHWPSNQPTQLVSSCFGGELLQWDLTQSWRRK 320
WD40-rpts 6____________) (____________________WD 7____________________)
Query 321 YTLFSASSEGQNHSRIVFNLCPLQTEDDKQLLLSTSMDRDVKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAIGVG 400
WD40-rpts (__________________WD 8_________________) (_________________WD 9__________
Query 401 DGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISSTYHKKTVYTLAWGP 480
WD40-rpts _______) (_________________WD10_________________) (_______________WD
Query 481 PVPPMSLGGEGDRPSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRDTNSIKYKLPVHTEISWKADGKIMALGNEDGSI 560
WD40-rpts 11_______________) (____________________WD12_________________
Query 561 EIFQIPNLKLICTIQQHHKLVNTISWHHEHGSQPELSYLMASGSNNAVIYVHNLKTVIESSPESPVTITEPYRTLSGHTA 640
WD40-rpts ___) (____________________WD13____________________) (___________
Query 641 KITSVAWSPHHDGRLVSASYDGTAQVWDALREEPLCNFRGHRGRLLCVAWSPLDPDCIYSGADDFCVHKWLTSMQDHSRP 720
WD40-rpts ______WD14_________________) (_________________WD15_________________) (_____
Query 721 PQGKKSIELEKKRLSQPKAKPKKKKKPTLRTPVKLESIDGNEEESMKENSGPVENGVSDQEGEEQAREPELPCGLAPAVS 800
WD40-rpts ____________WD16________________) (________________WD17________________)
Query 801 REPVICTPVSSGFEKSKVTINNKVILLKKEPPKEKPETLIKKRKARSLLPLSTSLDHRSKEELHQDCLVLATAKHSRELN 880
WD40-rpts
Query 881 EDVSADVEERFHLGLFTDRATLYRMIDIEGKGHLENGHPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPAAGYHV 960
WD40-rpts
Query 961 WLWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDPVLKDLYLSWGTVLERDGHYA 1040
WD40-rpts
Query 1041 VAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGEDELSASLALRCAQELLLANNWVGAQEALQLHESLQGQRLV 1120
WD40-rpts
Query 1121 FCLLELLSRHLEEKQLSEGKSSSSYHTWNTGTEGPFVERVTAVWKSIFSLDTPEQYQEAFQKLQNIKYPSATNNTPAKQL 1200
WD40-rpts
Query 1201 LLHICHDLTLAVLSQQMASWDEAVQALLRAVVRSYDSGSFTIMQEVYSAFLPDGCDHLRDKLGDHQSPATPAFKSLEAFF 1280
WD40-rpts
Query 1281 LYGRLYEFWWSLSRPCPNSSVWVRAGHRTLSVEPSQQLDTASTEETDPETSQPEPNRPSELDLRLTEEGERMLSTFKELF 1360
WD40-rpts
Query 1361 SEKHASLQNSQRTVAEVQETLAEMIRQHQKSQLCKSTANGPDKNEPEVEAEQPLCSSQSQCKEEKNEPLSLPELTKRLTE 1440
WD40-rpts
Query 1441 ANQRMAKFPESIKAWPFPDVLECCLVLLLIRSHFPGCLAQEMQQQAQELLQKYGNTKTYRRHCQTFCM 1508
WD40-rpts
 17 WD40-repeats found in QUERY=ENSP00000285873 (Len=1508): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-40 5.08 324.35 0.00265 12.5% 42.61 WD 2: Seg 4 54-95 6.95 401.76 0.00024 35.0% 56.61 WD 3: Seg 8 99-137 5.72 351.09 0.00115 12.5% 57.82 WD 4: Seg 12 141-180 5.06 323.60 0.00271 22.5% 53.49 WD 5: Seg 16 185-224 5.78 353.44 0.00107 25.0% 56.64 WD 6: Seg 20 225-255 4.75 310.81 0.00403 20.0% 43.70 WD 7: Seg 24 267-312 4.37 295.21 0.00653 25.0% 43.57 WD 8: Seg 28 325-365 5.66 348.61 0.00125 25.0% 42.43 WD 9: Seg 31 369-408 7.13 409.14 0.00019 37.5% 57.37 WD10: Seg 35 416-455 6.11 367.20 0.00070 25.0% 46.30 WD11: Seg 38 463-498 5.37 336.58 0.00181 12.5% 43.24 WD12: Seg 42 519-564 6.85 397.79 0.00027 25.0% 47.25 WD13: Seg 45 568-613 5.77 352.94 0.00109 22.5% 56.75 WD14: Seg 49 629-668 8.51 466.16 3.2e-05 60.0% 55.45 WD15: Seg 53 672-711 6.88 398.70 0.00026 30.0% 55.35 WD16: Seg 57 715-753 3.78 270.83 0.01386 12.5% 0.28 WD17: Seg 59 760-797 3.12 243.52 0.03206 7.5% 35.05Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-40 MGQE------PRTLPP------SPNWYCAR---CSDA-V-------P---G-GLF-GFAARTSVFLVR WD 2 54-95 -FRV------IGELVG------HTERVSGF---TFSH-H-------PGQYN-LCA-TSSDDGTVKIWD WD 3 99-137 -KTV------VTEHAL------HQHTISTL---HWSP-R-------V---K-DLI-VSGDEKGVVFCY WD 4 141-180 -RND------SQHLFI------EPRTIFCL---TCSP-H-------H---E-DLVAIGYKDGIVVIID WD 5 185-224 -GEV------IHRLRG------HDDEIHSI---AWCPLP-------G---E-DCL-SINQEETSEEAE WD 6 225-255 ---------------I------TNGNAVAQ---APVT-K-------G---C-YLA-TGSKDQTIRIWS WD 7 267-312 LPFL------KRRGGGIDPTVKERLWLTLH---WPSN-Q-------P---T-QLV-SSCFGGELLQWD WD 8 325-365 SAS--------SEGQN------HSRIVFNLCPLQTED-D-------K---Q-LLL-STSMDRDVKCWD WD 9 369-408 -LEC------SWTLPS------LGGFAYSL---AFSSVD-------I---G-SLA-IGVGDGMIRVWN WD10 416-455 -YDV------KNFWQG------VKSKVTAL---CWHP-T-------K---EGCLA-FGTDDGKVGLYD WD11 463-498 ----------QISSTY------HKKTVYTL---AWGP-P-------V---P-PMS-LGGEGDRPSLAL WD12 519-564 AFDINKLIRDTNSIKY------KLPVHTEI---SWKA-D-------G---K-IMA-LGNEDGSIEIFQ WD13 568-613 -LKL------ICTIQQ------HHKLVNTI---SWHH-EHGSQPELS---Y-LMA-SGSNNAVIYVHN WD14 629-668 -TEP------YRTLSG------HTAKITSV---AWSP-H-------H---DGRLV-SASYDGTAQVWD WD15 672-711 -EEP------LCNFRG------HRGRLLCV---AWSPLD-------P---D-CIY-SGADDFCVHKWL WD16 715-753 -QDH------SRPPQG------KKSIELEK---KRLS-Q-------P---K-AKP-KKKKKPTLRTPV WD17 760-797 -GNE------EESMKE------NSGPVENG---VSDQ-E-------G---E-EQA-REP-ELPCGLAP WD40 Template TGEC------LRTLSG------HTSGVTSV---SFSP-D-------G---K-RLV-SGSEDGTIKVWD |
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