WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000292309 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000292309 (Len=2570) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000292309, Len=2570): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAASERLYELWLLYYAQKDLGYLQQWLKAFVGAFKKSISLSSLEPRRPEEAGAEVPLLPLDELHVLAEQLHQADLEQALL 80
WD40-rpts
Query 81 LLKLFIILCRNLENIEAGRGQVLVPRVLALLTKLVAELKGCPPPQGRGTQLENVALHALLLCEGLFDPYQTWRRQRSGEV 160
WD40-rpts
Query 161 ISSKEKSKYKFPPAALPQEFSAFFQESLQNADHLPPILLLRLIHLFCAVLAGGKENGQMAVSDGSVKGLLSVVRGWSRGP 240
WD40-rpts
Query 241 APDPCLVPLALEALVGAVHVLHASRAPPRGPELRALLESYFHVLNADWPAGLSSGPEEALVTLRVSMLDAIPMMLACEDR 320
WD40-rpts
Query 321 PVLQATFLSNNCFEHLTRLIQNSKLYLQSRAPPEGDSDLATRLLTEPDVQKVLDQDTDAIAVHVVRVLTCIMSDSPSAKE 400
WD40-rpts
Query 401 VFKERIGYPHLQEVLQSHGPPTHRLLQELLNMAVEGDHSMCPPPPIRNEQPVLVLAQWLPSLPTAELRLFLAQRLRWLCD 480
WD40-rpts
Query 481 SCPASRATCVQAGLVGCLLETLSTGLALEARCQEQLLALLQALGRVSIRPMELRHLLRPRPGLDSEPGGAEAGKARHAGA 560
WD40-rpts
Query 561 VIRTLSGMARHQGPARALRYFDLTPSMAGIMVPPVQRWPGPGFTFHAWLCLHPMDTAPTPAPTRPLQRKQLYSFFTSSGS 640
WD40-rpts
Query 641 GFEAFFTAAGTLVVAVCTRKEYLTMSLPEVSFADSAWHCVAIVHVPGRRPFSQNLVHVYKDGHLVKTAPLRCPSLSEPFS 720
WD40-rpts
Query 721 SCCIGSAGYRTTTTTTGLPTPPVPATLAYTHPALTRSQSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTRWGSPTSLE 800
WD40-rpts
Query 801 GELGAVAIFHEALQATALRTLCTLGPNETAPFKPEGELHELSTRLLLHYSPQACKNNICLDLSPSHGLDGRLTGHRVETW 880
WD40-rpts
Query 881 DVKDVVNCVGGMGALLPLLERVAAQPKEAEAGPAETHDLVGPELTSGHNTQGLVLPLGKSSEERMERNAVAAFLLMLRNF 960
WD40-rpts
Query 961 LQGHMVNQESLVQCQGPAIIGALLRKVPSWAMDMNVLMSAQLLMEQVAAEGSGPLLYLLYQHLLFNFHLWTLSDFAVRLG 1040
WD40-rpts
Query 1041 HIQYMSSIVREHRQKLRKKYGVQFILDALRTHYSPQRERPLAADDLRTVQTSLLGLAREFLVRSLSADDVQVTQTMLSFL 1120
WD40-rpts
Query 1121 AATGDDGQILRRLQQNERLPERSRQRLRLRECGLQGLVACLPEGTVSPQLCQGLYKLFLGAGSGNTAGGGGSSGTLTPAS 1200
WD40-rpts
Query 1201 QPGTPSPLDGPRPFPAAPGRHSSSLSNVLEDGSLPEPTISGDDTSNTSNPQQTSEEELCNLLTNVLFSVTWRGVEGSDEA 1280
WD40-rpts
Query 1281 AWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAPVGVLASLTQQALWLLRLLQDFLCAEGHGNQEL 1360
WD40-rpts
Query 1361 WSEKLFEGVCSLLDRLGAWPHLANGTADLREMAQIGLRLVLGYILLEDPQLHAQAYVRLHMLLQTAVPARREEACYVLSK 1440
WD40-rpts
Query 1441 LEAALGRVLNTSSLESATDEAGSPLAAAAAAAAAERCSWLVPLVRTLLDRAYEPLGLQWGLPSLPPTNGSPTFFEDFQAF 1520
WD40-rpts
Query 1521 CATPEWRHFIDKQVQPTMSQFEMDTYAKSHDLMSGFWNACYDMLMSSGQRRQWERAQSRRAFQELVLEPAQRRARLEGLR 1600
WD40-rpts
Query 1601 YTAVLKQQATQHSMALLHWGALWRQLASPCGAWALRDTPIPRWKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLGEV 1680
WD40-rpts
Query 1681 PLTPTEEASLPLAVTKEAKVSTPPELLQEDQLGEDELAELETPMEAAELDEQREKLVLSAECQLVTVVAVVPGLLEVTTQ 1760
WD40-rpts
Query 1761 NVYFYDGSTERVETEEGIGYDFRRPLAQLREVHLRRFNLRRSALELFFIDQANYFLNFPCKVGTTPVSSPSQTPRPQPGP 1840
WD40-rpts
Query 1841 IPPHTQVRNQVYSWLLRLRPPSQGYLSSRSPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQ 1920
WD40-rpts
Query 1921 DYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQ 2000
WD40-rpts
Query 2001 SGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQHR 2080
WD40-rpts
Query 2081 QALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPT 2160
WD40-rpts
Query 2161 RLSAEEAAHRLARLDTNSPSIFQHLDELKAFFAEVVSDGVPLVLALVPHRQPHSFITQGSPDLLVTVSASGLLGTHSWLP 2240
WD40-rpts
Query 2241 YDRNISNYFSFSKDPTMGSHKTQRLLSGPWVPGSGVSGQALAVAPDGKLLFSGGHWDGSLRVTALPRGKLLSQLSCHLDV 2320
WD40-rpts (___________________WD 1__________________) (____________
Query 2321 VTCLALDTCGIYLISGSRDTTCMVWRLLHQGGLSVGLAPKPVQVLYGHGAAVSCVAISTELDMAVSGSEDGTVIIHTVRR 2400
WD40-rpts _____WD 2________________) (_________________WD 3________________)
Query 2401 GQFVAALRPLGATFPGPIFHLALGSEGQIVVQSSAWERPGAQVTYSLHLYSVNGKLRASLPLAEQPTALTVTEDFVLLGT 2480
WD40-rpts
Query 2481 AQCALHILQLNTLLPAAPPLPMKVAIRSVAVTKERSHVLVGLEDGKLIVVVAGQPSEVRSSQFARKLWRSSRRISQVSSG 2560
WD40-rpts (__________________WD 4__________________)
Query 2561 ETEYNPTEAR 2570
WD40-rpts
 4 WD40-repeats found in QUERY=ENSP00000292309 (Len=2570): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 24 2262-2304 3.04 240.33 0.03535 32.5% 40.30 WD 2: Seg 27 2308-2346 6.61 387.75 0.00037 40.0% 58.22 WD 3: Seg 31 2359-2397 4.99 320.77 0.00296 35.0% 53.81 WD 4: Seg 43 2490-2531 3.68 266.79 0.01570 20.0% 43.71Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2262-2304 TQRLL--SGPWVPGSGVSGQALAVAPDGKLLFSGGHWDGSLRVTA WD 2 2308-2346 -GKLL--S--QLSCHLDVVTCLALDTCGIYLISGSR-DTTCMVWR WD 3 2359-2397 -PKPV--Q--VLYGHGAAVSCVAISTELDMAVSGSE-DGTVIIHT WD 4 2490-2531 LNTLLPAA--PPLPMKVAIRSVAVTKERSHVLVGLE-DGKLIVVV WD40 Template TGECL--R--TLSGHTSGVTSVSFSPDGKRLVSGSE-DGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |