WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000293883    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000293883 (Len=790)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000293883, Len=790):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKMSRVTTALGGSVLTGRTMHCHLDAPANAISVCRDAAQVVVAGRSIFKIYAIEEEQFVEKLNLRVGRKPSLNLSCADV 80  
WD40-rpts                    (_________________WD 1________________)   (_____________________WD

Query       81 VWHQMDENLLATAATNGVVVTWNLGRPSRNKQDQLFTEHKRTVNKVCFHPTEAHVLLSGSQDGFMKCFDLRRKDSVSTFS 160 
WD40-rpts       2____________________)      (_________________WD 3_________________)   (_______

Query      161 GQSESVRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMTTH 240 
WD40-rpts      __________WD 4_________________)    (_________________WD 5_________________)(___

Query      241 RAKEMHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYVWDVRRPFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKD 320 
WD40-rpts      _________________WD 6____________________)        (________________WD 7_________

Query      321 SSLCQHLFRDASQPVERANPEGLCYGLFGDLAFAAKESLVAAESGRKPYTGDRRHPIFFKRKLDPAEPFAGLASSALSVF 400 
WD40-rpts      ______)      (_________________WD 8_________________)        (_________________W

Query      401 ETEPGGGGMRWFVDTAERYALAGRPLAELCDHNAKVARELGRNQVAQTWTMLRIIYCSPGLVPTANLNHSVGKGGSCGLP 480 
WD40-rpts      D 9________________)                                                            

Query      481 LMNSFNLKDMAPGLGSETRLDRSKGDARSDTVLLDSSATLITNEDNEETEGSDVPADYLLGDVEGEEDELYLLDPEHAHP 560 
WD40-rpts                                                                                      

Query      561 EDPECVLPQEAFPLRHEIVDTPPGPEHLQDKADSPHVSGSEADVASLAPVDSSFSLLSVSHALYDSRLPPDFFGVLVRDM 640 
WD40-rpts                                                                                      

Query      641 LHFYAEQGDVQMAVSVLIVLGERVRKDIDEQTQEHWYTSYIDLLQRFRLWNVSNEVVKLSTSRAVSCLNQASTTLHVNCS 720 
WD40-rpts                                                                                      

Query      721 HCKRPMSSRGWVCDRCHRCASMCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCEYS 790 
WD40-rpts                                                                            



9 WD40-repeats found in QUERY=ENSP00000293883 (Len=790):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    15-53       3.61  263.75  0.01724       17.5%     47.24
  WD 2:  Seg  5    57-103      5.66  348.26  0.00126       17.5%     37.98
  WD 3:  Seg  8   110-149      7.30  416.03  0.00015       32.5%     47.91
  WD 4:  Seg 12   153-192      7.81  437.07  8.0e-05       32.5%     50.97
  WD 5:  Seg 15   197-236      7.42  421.19  0.00013       30.0%     48.73
  WD 6:  Seg 19   237-282      5.52  342.66  0.00150       22.5%     47.14
  WD 7:  Seg 23   291-327      5.75  352.18  0.00112       20.0%     47.76
  WD 8:  Seg 26   334-373      3.91  276.02  0.01181       10.0%     17.75
  WD 9:  Seg 29   382-420      5.00  321.39  0.00290       15.0%     -5.15
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   15-53     -VL---TGRTMHCHLDAPANAISV--C--------R-DAA-QV---VVAG-RSIFKIYA
   WD 2   57-103    -EQ---FVEKLNLRVGR-KPSLNL--SCADVVWHQM-DEN-LL---ATAATNGVVVTWN
   WD 3  110-149    -NK---QDQLFTEHKRT-VNKVCF--H--------PTEAH-VL---LSGSQDGFMKCFD
   WD 4  153-192    -KD---SVSTFSGQSES-VRDVQF--S--------IRDYF-TF---ASTFENGNVQLWD
   WD 5  197-236    -DR---CERMFTAHNGP-VFCCDW--H--------P-EDRGWL---ATGGRDKMVKVWD
   WD 6  237-282    MTTHRAKEMHCVQTIAS-VARVKW--R--------P-ECR-HHLATCSMMVDHNIYVWD
   WD 7  291-327    --------AMFEEHRDV-TTGIAWRHP--------H-DPS-FL---LSGSKDSSLCQHL
   WD 8  334-373    -PV---ERANPEGLCYGLFGDLAF--A--------A-KES-LV---AAESGRKPYTGDR
   WD 9  382-420    KLD---PAEPFAGLASS-ALSV-F--E--------T-EPG-GG---GMRWFVDTAERYA

   WD40 Template    TGE---CLRTLSGHTSG-VTSVSF--S--------P-DGK-RL---VSGSEDGTIKVWD


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Last modified: 09 Jan 2019