WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000311024    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000311024 (Len=745)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000311024, Len=745):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGDGGTPKPTVAVSAAAPAGAAP 80  
WD40-rpts                                                                                      

Query       81 VPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAA 160 
WD40-rpts                                                                                      

Query      161 PDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF 240 
WD40-rpts                                                                                      

Query      241 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRH 320 
WD40-rpts                                                                                      

Query      321 LQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKP 400 
WD40-rpts                                                                                      

Query      401 KKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD 480 
WD40-rpts                                                                 (_________________WD 

Query      481 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRLWATD 560 
WD40-rpts      1________________)(_____________WD 2____________)                               

Query      561 HYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLL 640 
WD40-rpts       (_________________WD 3________________)   (_________________WD 4_______________

Query      641 WDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMT 720 
WD40-rpts      _)   (_________________WD 5________________)   (_________________WD 6___________

Query      721 KSTPVVHLHFTRRNLVLAAGAYSPQ 745 
WD40-rpts      _____)                   



6 WD40-repeats found in QUERY=ENSP00000311024 (Len=745):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   460-498      8.07  448.08  5.7e-05       27.5%     53.78
  WD 2:  Seg 10   499-529      5.52  342.71  0.00150       15.0%     44.25
  WD 3:  Seg 15   562-600      9.16  492.98  1.4e-05       32.5%     46.94
  WD 4:  Seg 19   604-642     10.66  555.13  2.0e-06       40.0%     52.22
  WD 5:  Seg 23   646-684     10.55  550.66  2.4e-06       47.5%     54.69
  WD 6:  Seg 27   688-726      3.69  267.22  0.01549        7.5%     42.77
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  460-498    SICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWS
   WD 2  499-529    --------VTPKKLRSVKQASDLSLIDKESDDVLERIMD
   WD 3  562-600    YQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWD
   WD 4  604-642    GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWD
   WD 5  646-684    GLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
   WD 6  688-726    AFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVV

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019