Input parameters:
Query = ENSP00000311024 (Len=745)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000311024, Len=745):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGDGGTPKPTVAVSAAAPAGAAP 80
WD40-rpts
Query 81 VPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAA 160
WD40-rpts
Query 161 PDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF 240
WD40-rpts
Query 241 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRH 320
WD40-rpts
Query 321 LQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKP 400
WD40-rpts
Query 401 KKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD 480
WD40-rpts (_________________WD
Query 481 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRLWATD 560
WD40-rpts 1________________)(_____________WD 2____________)
Query 561 HYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLL 640
WD40-rpts (_________________WD 3________________) (_________________WD 4_______________
Query 641 WDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMT 720
WD40-rpts _) (_________________WD 5________________) (_________________WD 6___________
Query 721 KSTPVVHLHFTRRNLVLAAGAYSPQ 745
WD40-rpts _____)
6 WD40-repeats found in QUERY=ENSP00000311024 (Len=745):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 460-498 8.07 448.08 5.7e-05 27.5% 53.78
WD 2: Seg 10 499-529 5.52 342.71 0.00150 15.0% 44.25
WD 3: Seg 15 562-600 9.16 492.98 1.4e-05 32.5% 46.94
WD 4: Seg 19 604-642 10.66 555.13 2.0e-06 40.0% 52.22
WD 5: Seg 23 646-684 10.55 550.66 2.4e-06 47.5% 54.69
WD 6: Seg 27 688-726 3.69 267.22 0.01549 7.5% 42.77
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 460-498 SICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWS
WD 2 499-529 --------VTPKKLRSVKQASDLSLIDKESDDVLERIMD
WD 3 562-600 YQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWD
WD 4 604-642 GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWD
WD 5 646-684 GLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
WD 6 688-726 AFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVV
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD