Input parameters:
Query = ENSP00000311899 (Len=415)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000311899, Len=415):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKLKSLLLRYYPPGIMLEYEKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSNH 80
WD40-rpts (________________________WD 1________________________)
Query 81 TFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCK 160
WD40-rpts (_________________WD 2________________) (_________________WD 3_______________
Query 161 LWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFD 240
WD40-rpts __) (_________________WD 4________________) (_________________WD 5__________
Query 241 HTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIAT 320
WD40-rpts ______) (_________________WD 6________________) (_________________WD 7______
Query 321 ASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGN 400
WD40-rpts __________) (_________________WD 8________________) (_________________WD 9__
Query 401 IVITGSKDNTCRIWR 415
WD40-rpts ______________)
9 WD40-repeats found in QUERY=ENSP00000311899 (Len=415):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 21-74 6.91 400.15 0.00025 20.0% 45.26
WD 2: Seg 7 82-120 9.20 494.84 1.3e-05 30.0% 52.61
WD 3: Seg 11 124-163 9.33 500.21 1.1e-05 42.5% 53.27
WD 4: Seg 15 167-205 10.51 548.70 2.5e-06 40.0% 57.16
WD 5: Seg 19 209-247 10.56 550.75 2.3e-06 45.0% 55.35
WD 6: Seg 23 251-289 10.00 527.63 4.8e-06 37.5% 55.48
WD 7: Seg 27 293-331 9.99 527.34 4.9e-06 32.5% 56.89
WD 8: Seg 31 335-373 10.52 549.02 2.5e-06 37.5% 57.08
WD 9: Seg 35 377-415 10.08 531.22 4.3e-06 37.5% 48.00
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 21-74 KHGELKTKSIDLLDLGPSTDVSALVEEI-QKAEPLLTASRTEQVKLLIQRLQEKL
WD 2 82-120 -FYLFKV-------LKAHILPLTNVALN-KSGSCFITGSYDRTCKLWD-------
WD 3 124-163 -GEELNT-------LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWS-------
WD 4 167-205 -GKCYHT-------FRGHTAEIVCLSFN-PQSTLVATGSMDTTAKLWD-------
WD 5 209-247 -GEEVYT-------LRGHSAEIISLSFN-TSGDRIITGSFDHTVVVWD-------
WD 6 251-289 -GRKVNI-------LIGHCAEISSASFN-WDCSLILTGSMDKTCKLWD-------
WD 7 293-331 -GKCVAT-------LTGHDDEILDSCFD-YTGKLIATASADGTARIFS-------
WD 8 335-373 -RKCIAK-------LEGHEGEISKISFN-PQGNHLLTGSSDKTARIWD-------
WD 9 377-415 -GQCLQV-------LEGHTDEIFSCAFN-YKGNIVITGSKDNTCRIWR-------
WD40 Template TGECLRT-------LSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD-------