WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000311899    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000311899 (Len=415)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000311899, Len=415):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKSLLLRYYPPGIMLEYEKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSNH 80  
WD40-rpts                          (________________________WD 1________________________)      

Query       81 TFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCK 160 
WD40-rpts       (_________________WD 2________________)   (_________________WD 3_______________

Query      161 LWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFD 240 
WD40-rpts      __)   (_________________WD 4________________)   (_________________WD 5__________

Query      241 HTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIAT 320 
WD40-rpts      ______)   (_________________WD 6________________)   (_________________WD 7______

Query      321 ASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGN 400 
WD40-rpts      __________)   (_________________WD 8________________)   (_________________WD 9__

Query      401 IVITGSKDNTCRIWR 415 
WD40-rpts      ______________)



9 WD40-repeats found in QUERY=ENSP00000311899 (Len=415):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    21-74       6.91  400.15  0.00025       20.0%     45.26
  WD 2:  Seg  7    82-120      9.20  494.84  1.3e-05       30.0%     52.61
  WD 3:  Seg 11   124-163      9.33  500.21  1.1e-05       42.5%     53.27
  WD 4:  Seg 15   167-205     10.51  548.70  2.5e-06       40.0%     57.16
  WD 5:  Seg 19   209-247     10.56  550.75  2.3e-06       45.0%     55.35
  WD 6:  Seg 23   251-289     10.00  527.63  4.8e-06       37.5%     55.48
  WD 7:  Seg 27   293-331      9.99  527.34  4.9e-06       32.5%     56.89
  WD 8:  Seg 31   335-373     10.52  549.02  2.5e-06       37.5%     57.08
  WD 9:  Seg 35   377-415     10.08  531.22  4.3e-06       37.5%     48.00
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   21-74     KHGELKTKSIDLLDLGPSTDVSALVEEI-QKAEPLLTASRTEQVKLLIQRLQEKL
   WD 2   82-120    -FYLFKV-------LKAHILPLTNVALN-KSGSCFITGSYDRTCKLWD-------
   WD 3  124-163    -GEELNT-------LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWS-------
   WD 4  167-205    -GKCYHT-------FRGHTAEIVCLSFN-PQSTLVATGSMDTTAKLWD-------
   WD 5  209-247    -GEEVYT-------LRGHSAEIISLSFN-TSGDRIITGSFDHTVVVWD-------
   WD 6  251-289    -GRKVNI-------LIGHCAEISSASFN-WDCSLILTGSMDKTCKLWD-------
   WD 7  293-331    -GKCVAT-------LTGHDDEILDSCFD-YTGKLIATASADGTARIFS-------
   WD 8  335-373    -RKCIAK-------LEGHEGEISKISFN-PQGNHLLTGSSDKTARIWD-------
   WD 9  377-415    -GQCLQV-------LEGHTDEIFSCAFN-YKGNIVITGSKDNTCRIWR-------

   WD40 Template    TGECLRT-------LSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD-------


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Last modified: 09 Jan 2019