Input parameters:
Query = ENSP00000315192 (Len=386)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000315192, Len=386):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDPGDDWLVESLRLYQDFYAFDLSGATRVLEWIDDKGVFVAGYESLKKNEILHLKLPLRLSVKENKGLFPERDFKVRHGG 80
WD40-rpts (_______
Query 81 FSDRSIFDLKHVPHTRLLVTSGLPGCYLQVWQVAEDSDVIKAVSTIAVHEKEESLWPRVAVFSTLAPGVLHGARLRSLQV 160
WD40-rpts __________WD 1_________________) (___________________WD 2_________________
Query 161 VDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPS 240
WD40-rpts _) (_________________WD 3________________) (________________WD 4___
Query 241 IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQ 320
WD40-rpts _____________) (________________WD 5________________)
Query 321 VEPLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDCPPLTPASFHLGL 386
WD40-rpts (___________________WD 6__________________)
6 WD40-repeats found in QUERY=ENSP00000315192 (Len=386):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 73-112 4.73 310.24 0.00410 20.0% 40.45
WD 2: Seg 10 120-162 5.19 328.95 0.00229 17.5% 39.16
WD 3: Seg 14 166-204 5.88 357.74 0.00094 15.0% 53.68
WD 4: Seg 18 217-254 5.15 327.48 0.00240 20.0% 13.81
WD 5: Seg 21 267-304 6.75 393.40 0.00031 25.0% 40.51
WD 6: Seg 25 328-370 6.36 377.45 0.00051 27.5% 49.74
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 73-112 DFK-VRHGG--FSDR----SIFDLKHVPHTRL-LVTSGLPGCYLQVWQ
WD 2 120-162 -IKAVSTIA--VHEKEESLWPRVAVFSTLAPG-VL-HGARLRSLQVVD
WD 3 166-204 -RKTTYTSD--VSDS----EELSSLQVLDADT-FA-FCCASGRLGLVD
WD 4 217-254 -PGPGSGGE--RWCA----EVGSWGQGP-GPS-IA-SLGSDGRLCLLD
WD 5 267-304 ---CPVSVP--SPDP----ELLRVTWAPGLKNCLA-ISGFDGTVQVYD
WD 6 328-370 RGHIFLDGNGMDPAP----LVTTHTWHPCRPRTLL-SATNDASLHVWD
WD40 Template TGECLRTLS--GHTS----GVTSVSFSPDGKR-LV-SGSEDGTIKVWD