WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000315192    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000315192 (Len=386)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000315192, Len=386):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPGDDWLVESLRLYQDFYAFDLSGATRVLEWIDDKGVFVAGYESLKKNEILHLKLPLRLSVKENKGLFPERDFKVRHGG 80  
WD40-rpts                                                                              (_______

Query       81 FSDRSIFDLKHVPHTRLLVTSGLPGCYLQVWQVAEDSDVIKAVSTIAVHEKEESLWPRVAVFSTLAPGVLHGARLRSLQV 160 
WD40-rpts      __________WD 1_________________)       (___________________WD 2_________________

Query      161 VDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPS 240 
WD40-rpts      _)   (_________________WD 3________________)            (________________WD 4___

Query      241 IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQ 320 
WD40-rpts      _____________)            (________________WD 5________________)                

Query      321 VEPLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDCPPLTPASFHLGL 386 
WD40-rpts             (___________________WD 6__________________)                



6 WD40-repeats found in QUERY=ENSP00000315192 (Len=386):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    73-112      4.73  310.24  0.00410       20.0%     40.45
  WD 2:  Seg 10   120-162      5.19  328.95  0.00229       17.5%     39.16
  WD 3:  Seg 14   166-204      5.88  357.74  0.00094       15.0%     53.68
  WD 4:  Seg 18   217-254      5.15  327.48  0.00240       20.0%     13.81
  WD 5:  Seg 21   267-304      6.75  393.40  0.00031       25.0%     40.51
  WD 6:  Seg 25   328-370      6.36  377.45  0.00051       27.5%     49.74
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   73-112    DFK-VRHGG--FSDR----SIFDLKHVPHTRL-LVTSGLPGCYLQVWQ
   WD 2  120-162    -IKAVSTIA--VHEKEESLWPRVAVFSTLAPG-VL-HGARLRSLQVVD
   WD 3  166-204    -RKTTYTSD--VSDS----EELSSLQVLDADT-FA-FCCASGRLGLVD
   WD 4  217-254    -PGPGSGGE--RWCA----EVGSWGQGP-GPS-IA-SLGSDGRLCLLD
   WD 5  267-304    ---CPVSVP--SPDP----ELLRVTWAPGLKNCLA-ISGFDGTVQVYD
   WD 6  328-370    RGHIFLDGNGMDPAP----LVTTHTWHPCRPRTLL-SATNDASLHVWD

   WD40 Template    TGECLRTLS--GHTS----GVTSVSFSPDGKR-LV-SGSEDGTIKVWD


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Last modified: 09 Jan 2019