WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000316051    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000316051 (Len=821)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000316051, Len=821):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVAPVLETSHVFCCPNRVRGVLNWSSGPRGLLAFGTSCSVVLYDPLKRVVVTNLNGHTARVNCIQWICKQDGSPSTELVS 80  
WD40-rpts          (_________________WD 1_________________)   (___________________WD 2_________

Query       81 GGSDNQVIHWEIEDNQLLKAVHLQGHEGPVYAVHAVYQRRTSDPALCTLIVSAAADSAVRLWSKKGPEVTWKTGQVERGR 160 
WD40-rpts      __________)(_______________________WD 3_______________________)  (______________

Query      161 AWKPPASLALCSRSCDSMVSCYASILCKALWKEKLHTFWHHNRISFLPSAFRPIPILACGNDDCRIHIFAQQNDQFQKVL 240 
WD40-rpts      __WD 4________________)   (___________________WD 5___________________)     (____

Query      241 SLCGHEDWIRGVEWAAFGRDLFLASCSQDCLIRIWKLYIKSTSLETQDDDNIRLKENTFTIENESVKIAFAVTLETVLAG 320 
WD40-rpts      ______________WD 6_________________)                                   (________

Query      321 HENWVNAVHWQPVFYKDGVLQQPVRLLSASMDKTMILWAPDEESGVWLEQREWTPEIVISGHFDGVQDLVWDPEGEFIIT 400 
WD40-rpts      _____________WD 7_____________________)             (_________________WD 8______

Query      401 VGTDQTTRLFAPWKRKDQSQVTWHEIARPQIHGYDLKCLAMINRFQFVSGADEKVLRVFSAPRNFVENFCAITGQSLNHV 480 
WD40-rpts      __________)           (________________WD 9________________)   (________________

Query      481 LCNQDSDLPEGATVPALGLSNKAVFQGDIASQPSDEEELLTSTGFEYQQVAFQPSILTEPPTEDHLLQNTLWPEVQKLYG 560 
WD40-rpts      ____WD10___________________)     (________________WD11________________)(________

Query      561 HGYEIFCVTCNSSKTLLASACKAAKKEHAAIILWNTTSWKQVQNLVFHSLTVTQMAFSPNEKFLLAVSRDRTWSLWKKQD 640 
WD40-rpts      ___________WD12___________________)   (_________________WD13________________)   

Query      641 TISPEFEPVFSLFAFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECDSTDDCIEHNIGPCSSVLDVGGAVTA 720 
WD40-rpts                   (_________________WD14________________)                    (_______

Query      721 VSVCPVLHPSQRYVVAVGLECGKICLYTWKKTDQVPEINDWTHCVETSQSQSHTLAIRKLCWKNCSGKTEQKEAEGAEWL 800 
WD40-rpts      ________WD15_______________)(_______________________________WD16________________

Query      801 HFASCGEDHTVKIHRVNKCAL 821 
WD40-rpts      ______________)      



16 WD40-repeats found in QUERY=ENSP00000316051 (Len=821):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       6.41  379.64  0.00048       10.0%     51.87
  WD 2:  Seg  5    48-91       6.41  379.41  0.00048       27.5%     55.54
  WD 3:  Seg  9    92-143      6.03  363.83  0.00078       22.5%     54.81
  WD 4:  Seg 13   146-183      5.48  341.13  0.00157       17.5%     52.80
  WD 5:  Seg 17   187-230      4.62  305.52  0.00474       27.5%     47.04
  WD 6:  Seg 21   236-276      7.08  407.31  0.00020       27.5%     51.55
  WD 7:  Seg 28   312-359      6.66  389.77  0.00035       32.5%     49.80
  WD 8:  Seg 33   373-411      8.43  463.02  3.6e-05       22.5%     52.19
  WD 9:  Seg 37   423-460      5.12  326.22  0.00250       12.5%     47.86
  WD10:  Seg 41   464-508      4.73  310.00  0.00413       10.0%     43.25
  WD11:  Seg 44   514-551      4.20  288.21  0.00811       15.0%     25.07
  WD12:  Seg 48   552-595      6.52  384.11  0.00041       22.5%     52.90
  WD13:  Seg 52   599-637      9.09  490.23  1.5e-05       32.5%     55.98
  WD14:  Seg 56   654-692      7.54  426.10  0.00011       30.0%     44.58
  WD15:  Seg 60   713-748      3.81  272.04  0.01336       22.5%     40.05
  WD16:  Seg 64   749-815      4.00  279.73  0.01053       17.5%     44.19
Multiple sequence alignment of 16 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-44     VLE----T--------------SHVFCCPNRVR-GVLNWSS-------------GPR--------G------LLAFG-----TSCSVVLYD
   WD 2   48-91     -RV----V--------------VTNLNGHTARV-NCIQWIC--------KQDGSPST--------E------LVSGG-----SDNQVIHWE
   WD 3   92-143    IEDNQLLK--------------AVHLQGHEGPV-YAVHAVY-------------QRRTSDPALCTL------IVSAA-----ADSAVRLWS
   WD 4  146-183    -GP----E--------------VTWKTGQVERG-RAW-KPP-------------ASL--------A------LCSRS-----CDSMVSCYA
   WD 5  187-230    -CK----A--------------LWKEKLHTFWHHNRISFLP-------------SAF--------R--PIPILACGN-----DDCRIHIFA
   WD 6  236-276    -FQ----K--------------VLSLCGHEDWI-RGVEWAA-------------FGR------DLF------LASCS-----QDCLIRIWK
   WD 7  312-359    -VT----L--------------ETVLAGHENWV-NAVHWQP----VFYKDGVLQQPV--------R------LLSAS-----MDKTMILWA
   WD 8  373-411    -WT----P--------------EIVISGHFDGV-QDLVWDP-------------EGE--------F------IITVG-----TDQTTRLFA
   WD 9  423-460    -WH----E--------------IARPQIHGYDL-KCLAMIN-------------RFQ---------------FVSGA-----DEKVLRVFS
   WD10  464-508    -NF----V--------------ENFCAITGQSL-NHVLCNQ-------------DSD--------LPEGATVPALGL-----SNKAVFQGD
   WD11  514-551    -SD----E--------------EELLTSTGFEY-QQVAFQP-------------SI---------L------TEPPT-----EDHLLQNTL
   WD12  552-595    -WP----E--------------VQKLYGHGYEI-FCVTCNS-------------SKT--------L------LASACKAAKKEHAAIILWN
   WD13  599-637    -WK----Q--------------VQNLVFHSLTV-TQMAFSP-------------NEK--------F------LLAVS-----RDRTWSLWK
   WD14  654-692    -AF----T--------------NKITSVHSRII-WSCDWSP-------------DSK--------Y------FFTGS-----RDKKVVVWG
   WD15  713-748    ---------------------------DVGGAV-TAVSVCP--------VLHPSQRY--------V------VAVGL-----ECGKICLYT
   WD16  749-815    WKK----TDQVPEINDWTHCVETSQSQSHTLAI-RKLCWKNCSGKTEQKEAEGAEWL--------H------FASCG-----EDHTVKIHR

   WD40 Template    TGE----C--------------LRTLSGHTSGV-TSVSFSP-------------DGK--------R------LVSGS-----EDGTIKVWD


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Last modified: 09 Jan 2019