WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000320648 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000320648 (Len=1622) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000320648, Len=1622): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEAEVWEAEGYNLVLDSDLYDADGYDVPDPGLLTEKNELTFTEPSQVLPFLTSSQQWQSLTPRARARRLWLLLRTSLHEV 80
WD40-rpts
Query 81 VEKEKRAELRAARLTHGLEPLRRLEVAAGLRSVAQDPVGGRFVVLDGAGRLHLHKEDGWAQETLLAPVRLTGLVTVLGPL 160
WD40-rpts (_________________WD 1________________)
Query 161 GAVGRFVGWGPAGLAILRPNLSLLWLSEQGVGRAPGWAPTCCLPVPDLRLLLVAEMNSSLALWQFRSGGRRLVLRGSALH 240
WD40-rpts (_________________________WD 2________________________) (____
Query 241 PPPSPTGRLMRLAVAPVPPHHVLRCFAAYGSAVLTFDLHAWTLVDVRRDLHKTTISDLAYCEEVEAMVTASRDSTVKVWE 320
WD40-rpts ______________WD 3__________________)(___________________WD 4__________________)
Query 321 ADWQIRMVFVGHTGPVTAMTVLPNTTLVLSASQDGTLRTWDLQAAAQVGEVALGFWGQDKLSRRVGRLLAPVRPGWPVLS 400
WD40-rpts (_________________WD 5________________) (_________________WD 6_______
Query 401 LCASSMQLWRVRELYSPLAQLPAKVLHVQVAPALPAPAHQSLPTRLVCACADGSVYLLSAATGRIVSSLLLEPEDCAAAV 480
WD40-rpts _________)(______________________WD 7_____________________)(___________________W
Query 481 AYCLPREALWLLTRAGHLVRANAARCPMSVLHRVCPPPPPAPQPCCLHLYSHLTDLEGAFSSWEIVRQHWGELRCSSVAC 560
WD40-rpts D 8__________________) (_____________
Query 561 AWKNKNRYLPVVGHTDGTLSVLEWLSSKTVFQTEAHSPGPVVAIASTWNSIVSSGGDLTVKMWRVFPYAEESLSLLRTFS 640
WD40-rpts ___WD 9_______________) (________________WD10________________) (__________
Query 641 CCYPAVALCALGRRVTAGFEDPDSATYGLVQFGLGDSPRLDHRPQDDPTDHITGLCCCPTLKLYACSSLDCTVRIWTAEN 720
WD40-rpts _______WD11________________) (_________________WD12________________)(__
Query 721 RLLRLLQLNGAPQALAFCSNSGDLVLALGSRLCLVSHRLYLPTSYLVKKMCRKAPDVVDDPPLPLMSQESLTSAQLQRLT 800
WD40-rpts _______________WD13_________________)
Query 801 NLHGAASLSEALSLIHRRRATSQHLVPKEDLDAIVARDRDLQQLRLGLVVPAAQPPPSWQQRQEGFDNYLRLIYGSGLLG 880
WD40-rpts
Query 881 MQSGRGSQQWSAGTLRVERETRDVCAVPQAAHCLARAEVSTAAQTVPTALSPQDLGALGQHFSQSPRVTVPIPPTHRRVH 960
WD40-rpts
Query 961 SKASQLLARSSLSHYLGISLDLQLQLEQLRGRTTMALDLPSSHLQCRIPLLPKRWDKEPLSSLRGFFPATVQPHKHCLRP 1040
WD40-rpts
Query 1041 ICFPGYVPNSAVLQQMWLNAEPGASQDALWLWRPRPSQTQWQRKLLQWMGEKPGEEGEEDKKEEEEEKEDEELDWALASL 1120
WD40-rpts
Query 1121 SPHSNQQLDSWELEDQSAVDWTQEPRRRSCKVARTHPHPWHRHGSLLLDEHYGHLPKFLHFFIYQTWFKKLFPIFSLQAY 1200
WD40-rpts
Query 1201 PEAGTIEGLASLLVALLEKTTWVDRVHILQVLLRLLPNMSSDLQGQLQGLLVHLLNLDQPPSLQDQTQKKFVILALQLLL 1280
WD40-rpts
Query 1281 ACSLESRDVVLELMSYFLYSPVHCRPELKKLLHGLGLQDPEGFLFKEMMTWVQGPDLDSKAGLRTCCHQKLEDMIQELQE 1360
WD40-rpts
Query 1361 TPSQTSVVSGAPTRASVIPSGTSWSASGIFGRLSQVSEVPLMVVSPAEPHSLAPELQAQRMLAPKRSWGTPQLRLRVLSE 1440
WD40-rpts
Query 1441 TLKSFCLEPEARLHPAGPAQLPGEPPPLEETDWSHSQLLDLGPIDALNFFCEQLRAQQRSSLQEKAAHPHPPEPYTVAPV 1520
WD40-rpts
Query 1521 PDMVVPPPREHWYHPILRLQEAKPQRSARSAMRLRGPMRSRLCAGRTLDGPIRTLKLPLPRVEPQPFPLDWPMPPRPLPP 1600
WD40-rpts
Query 1601 RLLQPALQRYFLPADADPDTYS 1622
WD40-rpts
 13 WD40-repeats found in QUERY=ENSP00000320648 (Len=1622): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 97-135 5.51 342.17 0.00152 22.5% 46.69 WD 2: Seg 8 170-224 4.02 280.51 0.01028 20.0% 50.81 WD 3: Seg 13 236-277 3.52 260.22 0.01922 12.5% 36.91 WD 4: Seg 16 278-320 7.49 423.93 0.00012 20.0% 54.06 WD 5: Seg 20 323-361 9.57 510.13 8.3e-06 32.5% 52.49 WD 6: Seg 25 372-410 3.11 242.98 0.03260 7.5% 41.05 WD 7: Seg 28 411-459 6.52 383.93 0.00042 25.0% 46.12 WD 8: Seg 31 460-502 3.58 262.68 0.01782 10.0% 50.97 WD 9: Seg 38 547-583 5.62 347.01 0.00131 20.0% 43.55 WD10: Seg 41 587-624 6.13 367.77 0.00069 22.5% 52.26 WD11: Seg 45 630-668 6.84 397.09 0.00028 22.5% 41.65 WD12: Seg 48 679-717 7.00 403.80 0.00022 22.5% 47.35 WD13: Seg 51 718-757 3.50 259.28 0.01978 15.0% 43.06Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 97-135 -GL---EPLRRLEVAA---------------GLRSVAQDP---V---------GGRFVVLDGAGRLHLHK WD 2 170-224 GPA---GLAILRPNLSLLWLSEQGVGRAPGWAPTCCLPVP---D---------LRLLLVAEMNSSLALWQ WD 3 236-277 -GS---ALHPPPSPTG---------------RLMRLAVAPVPPH---------HVLRCFAAYGSAVLTFD WD 4 278-320 LHAWTLVDVRRDLHKT---------------TISDLAYCE---E---------VEAMVTASRDSTVKVWE WD 5 323-361 -WQ---IRMVFVGHTG---------------PVTAMTVLP---N---------TTLVLSASQDGTLRTWD WD 6 372-410 ALG---FWGQDKLSRR---------------VGRLLAPVR---P---------GWPVLSLC-ASSMQLWR WD 7 411-459 VRE---LYSPLAQLPA---------------KVLHVQVAP---ALPAPAHQSLPTRLVCACADGSVYLLS WD 8 460-502 AATGRIVSSLLLEPED---------------CAAAVAYCL---P---------REALWLLTRAGHLVRAN WD 9 547-583 RQ------HWGELRCS---------------SVACAWKNK---N---------RYLPVVGHTDGTLSVLE WD10 587-624 -SK---TVFQTEAH-S---------------PGPVVAIAS---T---------WNSIVSSGGDLTVKMWR WD11 630-668 -EE---SLSLLRTFSC---------------CYPAVALCA---L---------GRRVTAGFEDPDSATYG WD12 679-717 -RL---DHRPQDDPTD---------------HITGLCCCP---T---------LKLYACSSLDCTVRIWT WD13 718-757 AEN---RLLRLLQLNG---------------APQALAFCS---N---------SGDLVLALGSRLCLVSH WD40 Template TGE---CLRTLSGHTS---------------GVTSVSFSP---D---------GKRLVSGSEDGTIKVWD |
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