WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000321826    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000321826 (Len=1151)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000321826, Len=1151):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKFNIRKVLDGLTAGSSSASQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQKILAVGTQTGA 80  
WD40-rpts                                                     (________________WD 1____________

Query       81 LRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAILHSLKFCRERVTFCHLPFQSKWLYVG 160 
WD40-rpts      ____)  (_________________WD 2________________)     (_________________WD 3_______

Query      161 TERGNIHIVNVESFTLSGYVIMWNKAIELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEAI 240 
WD40-rpts      _________)            (__________________WD 4__________________)  (_____________

Query      241 HSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHGKQLKDGKKPEPCKPILKVEFKTTRSGEPFIILSGGLSYDT 320 
WD40-rpts      ____WD 5________________)                                                       

Query      321 VGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPVT 400 
WD40-rpts                         (_________________WD 6_________________)                     

Query      401 CCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTSK 480 
WD40-rpts                        (____________________WD 7____________________)                

Query      481 VFEKSRNKDDRPNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVITEVIPMLEVRLLYEINDVETPEGE 560 
WD40-rpts          (____________________WD 8___________________)                               

Query      561 QPPPLPTPVGGSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLAVNSS 640 
WD40-rpts                                                                     (______________WD

Query      641 YGLVVFGNCNGIAMVDYLQKAVLLNLGTIELYGSNDPYRREPRSPRKSRQPSGAGLCDISEGTVVPEDRCKSPTSGSSSP 720 
WD40-rpts       9______________)                                                               

Query      721 HNSDDEQKMNNFIEKVKTKSRKFSKMVANDIAKMSRKLSLPTDLKPDLDVKDNSFSRSRSSSVTSIDKESREAISALHFC 800 
WD40-rpts                                                                                      

Query      801 ETFTRKTDSSPSPCLWVGTTLGTVLVIALNLPPGGEQRLLQPVIVSPSGTILRLKGAILRMAFLDTTGCLIPPAYEPWRE 880 
WD40-rpts                                                                                      

Query      881 HNVPEEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVISLPTQNCAYKQNITETSFVLRGDIVALSNSICLA 960 
WD40-rpts                                                                                      

Query      961 CFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCFTNNGQALYLVSPTEIQRLTYSQETCENLQEMLGELFTPVETP 1040
WD40-rpts                                                                                      

Query     1041 EAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRSLAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLGDLEE 1120
WD40-rpts                                                                                      

Query     1121 RTAAMLSSAESFSKHAHEIMLKYKDKKWYQF 1151
WD40-rpts                                     



9 WD40-repeats found in QUERY=ENSP00000321826 (Len=1151):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    48-85       6.13  368.03  0.00068       20.0%     43.52
  WD 2:  Seg  5    88-126      6.50  383.15  0.00043       22.5%     56.71
  WD 3:  Seg  9   132-170      5.91  358.98  0.00090       25.0%     55.24
  WD 4:  Seg 14   183-224      6.16  369.15  0.00066       30.0%     47.40
  WD 5:  Seg 17   227-265      6.77  394.39  0.00030       20.0%     55.05
  WD 6:  Seg 26   340-379      4.61  305.27  0.00478        7.5%     15.29
  WD 7:  Seg 32   419-464      5.62  346.92  0.00131       20.0%     33.00
  WD 8:  Seg 37   485-529      4.37  295.04  0.00656        7.5%     44.45
  WD 9:  Seg 44   624-657      3.07  241.56  0.03404       17.5%     43.80
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   48-85     --L------CKT-VRHGFPYQPSALAFDP-VQKILAVGTQTGALRLFG
   WD 2   88-126    -GV------ECY-CQHDSGAAVIQLQFLI-NEGALVSALADDTLHLWN
   WD 3  132-170    -PA------ILH-SLKFCRERVTFCHLPF-QSKWLYVGTERGNIHIVN
   WD 4  183-224    WNK------AIELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWD
   WD 5  227-265    -SK------KAD-YRYTYDEAIHSVAWHH-EGKQFICSHSDGTLTIWN
   WD 6  340-379    MDY------SIV-DFLTLCETPYPNDFQE-PYAVVVLLEKDLVLIDLA
   WD 7  419-464    VGARQKRQGYSK-KEWPINGGNWGLGAQS-YPEIIITGHADGSVKFWD
   WD 8  485-529    SRN-KDDRPNTD-IVDEDPYAIQIISWCP-ESRMLCIAGVSAHVIIYR
   WD 9  624-657    VG-------------GEPPQQITSLAVNS-SYGLVVFGNCNGIAMVDY

   WD40 Template    TGE------CLR-TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019