WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000324158    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000324158 (Len=1121)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000324158, Len=1121):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDALEDYVWPRATSELILLPVTGLECVGDRLLAGEGPDVLVYSLDFGGHLRMIKRVQNLLGHYLIHGFRVRPEPNGDLDL 80  
WD40-rpts                                                                                      

Query       81 EAMVAVFGSKGLRVVKISWGQGHFWELWRSGLWNMSDWIWDARWLEGNIALALGHNSVVLYDPVVGCILQEVPCTDRCTL 160 
WD40-rpts                        (___________________WD 1___________________)   (______________

Query      161 SSACLIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDRRISGHVGIIFSMSYLESKGLLATASEDRSVRIWKVGD 240 
WD40-rpts      _____WD 2__________________)          (_________________WD 3________________)(__

Query      241 LRVPGGRVQNIGHCFGHSARVWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVITGGDDS 320 
WD40-rpts      ___________________WD 4____________________)  (_________________WD 5____________

Query      321 GIRLWHLVGRGYRGLGVSALCFKSRSRPGTLKAVTLAGSWRLLAVTDTGALYLYDVEVKCWEQLLEDKHFQSYCLLEAAP 400 
WD40-rpts      _____)           (________________WD 6________________)      (_________________W

Query      401 GPEGFGLCAMANGEGRVKVVPINTPTAAVDQTLFPGKVHSLSWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKE 480 
WD40-rpts      D 7_________________)   (__________________WD 8__________________)              

Query      481 RCRYLLPPSKQRWHTCSAFLPPGDFLVCGDRRGSVLLFPSRPGLLKDPGVGGKARAGAGAPVVGSGSSGGGNAFTGLGPV 560 
WD40-rpts      (_________________WD 9________________) (_________________WD10________________)(

Query      561 STLPSLHGKQGVTSVTCHGGYVYTTGRDGAYYQLFVRDGQLQPVLRQKSCRGMNWLAGLRIVPDGSMVILGFHANEFVVW 640 
WD40-rpts      _______________WD11_______________)   (___________________WD12__________________

Query      641 NPRSHEKLHIVNCGGGHRSWAFSDTEAAMAFAYLKDGDVMLYRALGGCTRPHVILREGLHGREITCVKRVGTITLGPEYG 720 
WD40-rpts      )  (_________________WD13_________________) (______________WD14_____________)(__

Query      721 VPSFMQPDDLEPGSEGPDLTDIVITCSEDTTVCVLALPTTTGSAHALTAVCNHISSVRAVAVWGIGTPGGPQDPQPGLTA 800 
WD40-rpts      _______________WD15________________)       (_________________WD16_______________

Query      801 HVVSAGGRAEMHCFSIMVTPDPSTPSRLACHVMHLSSHRLDEYWDRQRNRHRMVKVDPETRYMSLAVCELDQPGLGPLVA 880 
WD40-rpts      _)                                                      (_______________WD17____

Query      881 AACSDGAVRLFLLQDSGRILQLLAETFHHKRCVLKVHSFTHEAPNQRRRLLLCSAATDGSLAFWDLTTMLDHDSTVLEPP 960 
WD40-rpts      ___________)  (_______________________WD18______________________)               

Query      961 VDPGLPYRLGTPSLTLQAHSCGINSLHTLPTREGHHLVASGSEDGSLHVFVLAVEMLQLEEAVGEAGLVPQLRVLEEYSV 1040
WD40-rpts               (__________________WD19__________________)                       (_____

Query     1041 PCAHAAHVTGLKILSPSIMVSASIDQRLTFWRLGHGEPTFMNSTVFHVPDVADMDCWPVSPEFGHRCALGGQGLEVYNWY 1120
WD40-rpts      ___________WD20________________)                                                

Query     1121 D 1121
WD40-rpts       



20 WD40-repeats found in QUERY=ENSP00000324158 (Len=1121):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9    99-142      4.05  282.11  0.00979       12.5%     46.09
  WD 2:  Seg 13   146-188      5.44  339.31  0.00166       17.5%     51.88
  WD 3:  Seg 17   199-237      8.47  464.47  3.4e-05       27.5%     51.61
  WD 4:  Seg 21   238-284      6.08  365.89  0.00073       27.5%     54.11
  WD 5:  Seg 25   287-326      7.73  433.94  8.8e-05       25.0%     57.99
  WD 6:  Seg 29   338-375      4.52  301.23  0.00542       10.0%     54.46
  WD 7:  Seg 33   382-421      5.59  345.50  0.00137       17.5%     47.74
  WD 8:  Seg 37   425-466      5.05  323.45  0.00272       15.0%     49.29
  WD 9:  Seg 41   481-519      6.55  385.11  0.00040       20.0%     47.32
  WD10:  Seg 44   521-559      5.60  346.02  0.00135       12.5%     10.30
  WD11:  Seg 48   560-595      5.45  339.95  0.00163       15.0%     43.50
  WD12:  Seg 52   599-641      6.39  378.71  0.00049       20.0%     55.68
  WD13:  Seg 56   644-683      4.40  296.21  0.00633       15.0%     53.41
  WD14:  Seg 60   685-717      4.80  312.94  0.00377       17.5%     34.39
  WD15:  Seg 64   718-756      6.31  375.48  0.00054       12.5%     21.51
  WD16:  Seg 66   764-802      6.37  377.86  0.00050       15.0%     28.74
  WD17:  Seg 72   857-892      6.00  362.45  0.00081       12.5%     35.67
  WD18:  Seg 75   895-945      6.72  392.35  0.00032       22.5%     37.62
  WD19:  Seg 78   970-1011     4.59  304.44  0.00490       35.0%     46.11
  WD20:  Seg 84  1035-1072     6.19  370.20  0.00064       22.5%     46.11
Multiple sequence alignment of 20 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   99-142    WG---------QGHFWELWRSGLWNMS-----------D-WIWD----ARWLEGNI---AL-AL-G--HNSVVLYD
   WD 2  146-188    -G---------C------ILQEVPCTD-----------R-CTLSSACLIGDAWKEL---TI-VA-GAVSNQLLVWY
   WD 3  199-237    -V---------A------PDRRISGHV-----------G-IIFS----MSYLESKG---LL-AT-ASEDRSVRIWK
   WD 4  238-284    VGDLRVPGGRVQ------NIGHCFGHS-----------A-RVWQ----VKLLEN-----YL-IS-AGEDCVCLVWS
   WD 5  287-326    -G---------E------ILQAFRGHQ-----------GRGIRA----IAAHERQA---WV-IT-GGDDSGIRLWH
   WD 6  338-375    -S---------A------LCFKSRSRP-----------G-TLKA----VTLAGSWR---LL-AV--TDTGALYLYD
   WD 7  382-421    -E---------Q------LLEDKHFQS-----------Y-CLLE----AAPGPEGF---GLCAM-ANGEGRVKVVP
   WD 8  425-466    -P---------T------AAVDQTLFP-----------G-KVHS----LSWALRGYEELLL-LA-SGPGGVVACLE
   WD 9  481-519    -R---------C------RYLLPPSKQ-----------R-WHTC----SAFLPPGD---FL-VC-GDRRGSVLLFP
   WD10  521-559    -R---------P------GLLKDPGVG-----------G-KARA----GAGAPVVG---SG-SS-GGGNAFTGLGP
   WD11  560-595    -------------------VSTLPSLH-----------G-KQGV----TSVTCHGG---YV-YT-TGRDGAYYQLF
   WD12  599-641    -G---------Q------LQPVLRQKS-------CRGMN-WLAG----LRIVPDGS---MV-IL-GFHANEFVVWN
   WD13  644-683    -S---------H------EKLHIVNCG-----------G-GHRS----WAFSDTEA---AM-AFAYLKDGDVMLYR
   WD14  685-717    ----------------------LGGCT-----------R-PHVI----LREGLHGR---EI-TC-VKRVGTITLGP
   WD15  718-756    -E---------Y------GVPSFMQPD-----------D-LEPG----SEGPDLTD---IV-IT-CSEDTTVCVLA
   WD16  764-802    -A---------H------ALTAVCNHI-----------S-SVRA----VAVWGIGT---PG-GP-QDPQPGLTAHV
   WD17  857-892    DP---------E----------TRYMS-----------L-AVCE----LDQPGLGP---LV-AA-ACSDGAVRLFL
   WD18  895-945    DS---------G------RILQLLAETFHHKRCVLKVHS-FTHE----APNQRRRL---LL-CS-AATDGSLAFWD
   WD19  970-1011   -G---------T------PSLTLQAHS-----------C-GINS----LHTLPTREGHHLV-AS-GSEDGSLHVFV
   WD20 1035-1072   -L---------E------EYSVPCAHA-----------A-HVTG----LKIL-SPS---IM-VS-ASIDQRLTFWR

   WD40 Template    TG---------E------CLRTLSGHT-----------S-GVTS----VSFSPDGK---RL-VS-GSEDGTIKVWD


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Last modified: 09 Jan 2019