Input parameters:
Query = ENSP00000324203 (Len=548)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000324203, Len=548):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAGSAVSQELREGDPVSLSTPLE 80
WD40-rpts
Query 81 TEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANGPELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGS 160
WD40-rpts (_____________WD 1_____________) (__
Query 161 WSEFSTQPENFLKGCKWAPDGSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP 240
WD40-rpts _______________WD 2_________________) (________________WD
Query 241 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTARPGRDCEVRATFAK 320
WD40-rpts 3________________) (___________________WD 4__________________) (_____
Query 321 KQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQS 400
WD40-rpts ____________WD 5________________) (_________________WD 6_________________)
Query 401 GYPLWSLGREVTTNQRIYFDLDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS 480
WD40-rpts (__________________WD 7_________________) (_________________WD 8________
Query 481 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGTEGGVGELI 548
WD40-rpts ________) (________________WD 9________________)
9 WD40-repeats found in QUERY=ENSP00000324203 (Len=548):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 99-130 4.90 317.05 0.00332 17.5% 16.93
WD 2: Seg 6 158-197 9.83 520.89 5.9e-06 15.0% 47.06
WD 3: Seg 10 221-258 8.23 454.74 4.6e-05 22.5% 43.80
WD 4: Seg 14 262-304 6.77 394.52 0.00030 30.0% 52.98
WD 5: Seg 18 315-353 8.15 451.39 5.1e-05 15.0% 54.86
WD 6: Seg 22 357-396 9.32 499.83 1.1e-05 42.5% 55.23
WD 7: Seg 26 401-441 7.72 433.63 8.9e-05 35.0% 53.15
WD 8: Seg 30 451-489 7.38 419.31 0.00014 15.0% 46.00
WD 9: Seg 36 511-548 4.30 292.34 0.00713 15.0% 41.86
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 99-130 --------SENT-----SLPA--EEANGSLSEEEANGP-ELGSGKAME
WD 2 158-197 SGSWSEFSTQPE-----NFLK--GCKWAPDGSCILTNS-ADNILRIYN
WD 3 221-258 VE--GDTIYDYC-----WYSL--MSSAQPDTSYVASSS-RENPIHIWD
WD 4 262-304 -GELRASFRAYNHLDELTAAH--SLCFSPDGSQLFCGF--NRTVRVFS
WD 5 315-353 -RATFAKKQGQS-----GIIS--CIAFSPAQPLYACGS-YGRSLGLYA
WD 6 357-396 -GSPLALLGGHQ-----GGIT--HLCFHPDGNRFFSGARKDAELLCWD
WD 7 401-441 -GYPLWSLGREV-----TTNQRIYFDLDPTGQFLVSGS-TSGAVSVWD
WD 8 451-489 -PEPVLSFLPQK-----DCTN--GVSLHPSLPLLATAS-GQRVFPEPT
WD 9 511-548 ECR-LQLWWCGG-----APDS--SIPDDHQGEKGQGGT-EGGVGELI-
WD40 Template TGECLRTLSGHT-----SGVT--SVSFSPDGKRLVSGS-EDGTIKVWD