WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000324203    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000324203 (Len=548)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000324203, Len=548):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAGSAVSQELREGDPVSLSTPLE 80  
WD40-rpts                                                                                      

Query       81 TEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANGPELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGS 160 
WD40-rpts                        (_____________WD 1_____________)                           (__

Query      161 WSEFSTQPENFLKGCKWAPDGSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP 240 
WD40-rpts      _______________WD 2_________________)                       (________________WD 

Query      241 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTARPGRDCEVRATFAK 320 
WD40-rpts      3________________)   (___________________WD 4__________________)          (_____

Query      321 KQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQS 400 
WD40-rpts      ____________WD 5________________)   (_________________WD 6_________________)    

Query      401 GYPLWSLGREVTTNQRIYFDLDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS 480 
WD40-rpts      (__________________WD 7_________________)         (_________________WD 8________

Query      481 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGTEGGVGELI 548 
WD40-rpts      ________)                     (________________WD 9________________)



9 WD40-repeats found in QUERY=ENSP00000324203 (Len=548):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    99-130      4.90  317.05  0.00332       17.5%     16.93
  WD 2:  Seg  6   158-197      9.83  520.89  5.9e-06       15.0%     47.06
  WD 3:  Seg 10   221-258      8.23  454.74  4.6e-05       22.5%     43.80
  WD 4:  Seg 14   262-304      6.77  394.52  0.00030       30.0%     52.98
  WD 5:  Seg 18   315-353      8.15  451.39  5.1e-05       15.0%     54.86
  WD 6:  Seg 22   357-396      9.32  499.83  1.1e-05       42.5%     55.23
  WD 7:  Seg 26   401-441      7.72  433.63  8.9e-05       35.0%     53.15
  WD 8:  Seg 30   451-489      7.38  419.31  0.00014       15.0%     46.00
  WD 9:  Seg 36   511-548      4.30  292.34  0.00713       15.0%     41.86
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   99-130    --------SENT-----SLPA--EEANGSLSEEEANGP-ELGSGKAME
   WD 2  158-197    SGSWSEFSTQPE-----NFLK--GCKWAPDGSCILTNS-ADNILRIYN
   WD 3  221-258    VE--GDTIYDYC-----WYSL--MSSAQPDTSYVASSS-RENPIHIWD
   WD 4  262-304    -GELRASFRAYNHLDELTAAH--SLCFSPDGSQLFCGF--NRTVRVFS
   WD 5  315-353    -RATFAKKQGQS-----GIIS--CIAFSPAQPLYACGS-YGRSLGLYA
   WD 6  357-396    -GSPLALLGGHQ-----GGIT--HLCFHPDGNRFFSGARKDAELLCWD
   WD 7  401-441    -GYPLWSLGREV-----TTNQRIYFDLDPTGQFLVSGS-TSGAVSVWD
   WD 8  451-489    -PEPVLSFLPQK-----DCTN--GVSLHPSLPLLATAS-GQRVFPEPT
   WD 9  511-548    ECR-LQLWWCGG-----APDS--SIPDDHQGEKGQGGT-EGGVGELI-

   WD40 Template    TGECLRTLSGHT-----SGVT--SVSFSPDGKRLVSGS-EDGTIKVWD


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Last modified: 09 Jan 2019