WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000330753 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000330753 (Len=2320) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000330753, Len=2320): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQ 80
WD40-rpts
Query 81 ICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEIHRGKQLTG 160
WD40-rpts (_________________WD 1________________)
Query 161 CSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYEN 240
WD40-rpts (________________WD 2________________) (_________________WD 3_
Query 241 TMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEK 320
WD40-rpts _______________)(____________________WD 4____________________) (________
Query 321 PRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIAELESHTDKVDSIQFCNNGDRFLSGSRDGTARIWRFEQL 400
WD40-rpts __________WD 5_________________)(___________________WD 6___________________)(___
Query 401 EWRSILLDMATRISGDLSSEEERFMKPKVTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFD 480
WD40-rpts _______________________WD 7__________________________) (_________________WD 8_
Query 481 SRIMLSAGHDGSIFIWDITKGTKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFF 560
WD40-rpts ________________) (__________________WD 9__________________)
Query 561 HTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKYQRLVPGRENSADEHLIPQLGYVATSDGEVIEQIISL 640
WD40-rpts
Query 641 QTNDNDERSPESSILDGMIRQLQQQQDQRMGADQDTIPRGLSNGEETPRRGFRRLSLDIQSPPNIGLRRSGQVEGVRQMH 720
WD40-rpts
Query 721 QNAPRSQIATERDLQAWKRRVVVPEVPLGIFRKLEDFRLEKGEEERNLYIIGRKRKTLQLSHKSDSVVLVSQSRQRTCRR 800
WD40-rpts
Query 801 KYPNYGRRNRSWRELSSGNESSSSVRHETSCDQSEGSGSSEEDEWRSDRKSESYSESSSDSSSRYSDWTADAGINLQPPL 880
WD40-rpts
Query 881 RTSCRRRITRFCSSSEDEISTENLSPPKRRRKRKKENKPKKENLRRMTPAELANMEHLYEFHPPVWITDTTLRKSPFVPQ 960
WD40-rpts
Query 961 MGDEVIYFRQGHEAYIEAVRRNNIYELNPNKEPWRKMDLRDQELVKIVGIRYEVGPPTLCCLKLAFIDPATGKLMDKSFS 1040
WD40-rpts
Query 1041 IRYHDMPDVIDFLVLRQFYDEARQRNWQSCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTEIEKLSPWD 1120
WD40-rpts
Query 1121 MEPIPDNVDPPEELGASISVTTDELEKLLYKPQAGEWGQKSRDEECDRIISGIDQLLNLDIAAAFAGPVDLCTYPKYCTV 1200
WD40-rpts
Query 1201 VAYPTDLYTIRMRLVNRFYRRLSALVWEVRYIEHNARTFNEPESVIARSAKKITDQLLKFIKNQHCTNISELSNTSENDE 1280
WD40-rpts
Query 1281 QNAEDLDDSDLPKTSSGRRRVHDGKKSIRATNYVESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDF 1360
WD40-rpts
Query 1361 GTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDFKIGQKFNEKLRRSQRFKQ 1440
WD40-rpts
Query 1441 RQNCKGDSQPNKSIRNLKPKRLKSQTKIIPELVGSPTQSTSSRTAYLGTHKTSAGISSGVTSGDSSDSAESSERRKRNRP 1520
WD40-rpts
Query 1521 ITNGSTLSESEVEDSLATSLSSSASSSSEESKESSRARESSSRSGLSRSSNLRVTRTRAAQRKTGPVSLANGCGRKATRK 1600
WD40-rpts
Query 1601 RVYLSDSDNNSLETGEILKARAGNNRKVLRKCAAVAANKIKLMSDVEENSSSESVCSGRKLPHRNASAVARKKLLHNSED 1680
WD40-rpts
Query 1681 EQSLKSEIEEEELKDENQLLPVSSSHTAQSNVDESENRDSESESDLRVARKNWHANGYKSHTPAPSKTKFLKIESSEEDS 1760
WD40-rpts
Query 1761 KSHDSDHACNRTAGPSTSVQKLKAESISEEADSEPGRSGGRKYNTFHKNASFFKKTKILSDSEDSESEEQDREDGKCHKM 1840
WD40-rpts
Query 1841 EMNPISGNLNCDPIAMSQCSSDHGCETDLDSDDDKIEKPNNFMKDSASQDNGLSRKISRKRVCSSDSDSSLQVVKKSSKA 1920
WD40-rpts
Query 1921 RTGLLRITRRCAATAANKIKLMSDVEDVSLENVHTRSKNGRKKPLHLACTTAKKKLSDCEGSVHCEVPSEQYACEGKPPD 2000
WD40-rpts
Query 2001 PDSEGSTKVLSQALNGDSDSEDMLNSEHKHRHTNIHKIDAPSKRKSSSVTSSGEDSKSHIPGSETDRTFSSESTLAQKAT 2080
WD40-rpts
Query 2081 AENNFEVELNYGLRRWNGRRLRTYGKAPFSKTKVIHDSQETAEKEVKRKRSHPELENVKISETTGNSKFRPDTSSKSSDL 2160
WD40-rpts
Query 2161 GSVTESDIDCTDNTKTKRRKTKGKAKVVRKEFVPRDREPNTKVRTCMHNQKDAVQMPSETLKAKMVPEKVPRRCATVAAN 2240
WD40-rpts
Query 2241 KIKIMSNLKETISGPENVWIRKSSRKLPHRNASAAAKKKLLNVYKEDDTTINSESEKELEDINRKMLFLRGFRSWKENAQ 2320
WD40-rpts
 9 WD40-repeats found in QUERY=ENSP00000330753 (Len=2320): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 86-124 4.22 288.85 0.00795 20.0% 33.56 WD 2: Seg 7 177-214 8.60 469.88 2.9e-05 35.0% 45.18 WD 3: Seg 10 218-256 8.93 483.73 1.9e-05 30.0% 53.73 WD 4: Seg 14 257-302 7.90 440.81 7.1e-05 42.5% 52.97 WD 5: Seg 18 312-352 4.84 314.56 0.00358 30.0% 47.46 WD 6: Seg 22 353-396 9.40 502.96 1.0e-05 42.5% 54.51 WD 7: Seg 26 397-454 5.17 328.33 0.00234 25.0% 47.65 WD 8: Seg 30 458-497 7.96 443.29 6.6e-05 35.0% 55.13 WD 9: Seg 34 503-544 4.24 289.90 0.00769 15.0% 44.51Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 86-124 GP----ML---------DKEIPP--SISR---------V--TSL-LGA-GRQ----SLLRTAKDCRHTVWK WD 2 177-214 ------KM---------HRRILG--HLSA---------V--YCVAFDR-TGH----RIFTGSDDCLVKIWS WD 3 218-256 -G----RL---------LSTLRG--HSAE---------I--SDMAVNY-ENT----MIAAGSCDKIIRVWC WD 4 257-302 LR----TC-------APVAVLQG--HTGS---------I--TSLQFSP-MAKGSQRYMVSTGADGTVCFWQ WD 5 312-352 -P----RP---------LKFTEK--PRPG---------VQMLCSSFSV-GGM----FLATGSTDHVIRMYF WD 6 353-396 LGFEAPEK---------IAELES--HTDK---------V--DSIQFCN-NGD----RFLSGSRDGTARIWR WD 7 397-454 FE----QLEWRSILLDMATRISG--DLSSEEERFMKPKV--TMIAWNQ-NDS----IVVTAVNDHVLKVWN WD 8 458-497 -G----QL---------LHNLMG--HADE---------V--FVLETHPFDSR----IMLSAGHDGSIFIWD WD 9 503-544 KM----KH---------YFNMIEGQGHGA---------V--FDCKFSQ-DGQ----HFACTDSHGHLLIFG WD40 Template TG----EC---------LRTLSG--HTSG---------V--TSVSFSP-DGK----RLVSGSEDGTIKVWD |
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