WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000334016    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000334016 (Len=292)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000334016, Len=292):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNA 80  
WD40-rpts                    (_________________WD 1________________)   (_________________WD 2__

Query       81 RIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERT 160 
WD40-rpts      ______________)   (_______________WD 3_______________)  (_________________WD 4__

Query      161 ELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSSTAHPSMR 240 
WD40-rpts      ______________)   (___________________WD 5__________________)   (_______________

Query      241 WRGRPLARTLSVWTKDAKLCCGHSTDGALRAGRTPVPSSEEAHGLLQPCPGR 292 
WD40-rpts      __WD 6________________)                             



6 WD40-repeats found in QUERY=ENSP00000334016 (Len=292):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       9.43  504.07  1.0e-05       32.5%     53.54
  WD 2:  Seg  6    57-95      10.58  551.89  2.3e-06       45.0%     55.96
  WD 3:  Seg 10    99-134      6.94  401.31  0.00024       22.5%     45.79
  WD 4:  Seg 14   137-175      7.95  443.18  6.6e-05       25.0%     52.08
  WD 5:  Seg 18   179-221      8.55  467.74  3.1e-05       35.0%     55.69
  WD 6:  Seg 22   225-263      8.26  455.94  4.5e-05       15.0%     55.76
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   15-53     CEFKGSLSGSN----AGITSIEFDSAGSYLLAASNDFASRIWT
   WD 2   57-95     YRLRHTLTGHS----GKVLSAKFLLDNARIVSGSHDRTLKLWD
   WD 3   99-134    KVCIKTVFAGS----S---CNDIVCTEQCVMSGHFDKKIRFWD
   WD 4  137-175    SESIVREMELL----GKITALDLNPERTELLSCSRDDLLKVID
   WD 5  179-221    NAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWS
   WD 6  225-263    GKVEKVLSSTA----HPSMRWRGRPLARTLSVWTKDAKLCCGH

   WD40 Template    GECLRTLSGHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019