Input parameters:
Query = ENSP00000334016 (Len=292)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000334016, Len=292):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNA 80
WD40-rpts (_________________WD 1________________) (_________________WD 2__
Query 81 RIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERT 160
WD40-rpts ______________) (_______________WD 3_______________) (_________________WD 4__
Query 161 ELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSSTAHPSMR 240
WD40-rpts ______________) (___________________WD 5__________________) (_______________
Query 241 WRGRPLARTLSVWTKDAKLCCGHSTDGALRAGRTPVPSSEEAHGLLQPCPGR 292
WD40-rpts __WD 6________________)
6 WD40-repeats found in QUERY=ENSP00000334016 (Len=292):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 15-53 9.43 504.07 1.0e-05 32.5% 53.54
WD 2: Seg 6 57-95 10.58 551.89 2.3e-06 45.0% 55.96
WD 3: Seg 10 99-134 6.94 401.31 0.00024 22.5% 45.79
WD 4: Seg 14 137-175 7.95 443.18 6.6e-05 25.0% 52.08
WD 5: Seg 18 179-221 8.55 467.74 3.1e-05 35.0% 55.69
WD 6: Seg 22 225-263 8.26 455.94 4.5e-05 15.0% 55.76
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 15-53 CEFKGSLSGSN----AGITSIEFDSAGSYLLAASNDFASRIWT
WD 2 57-95 YRLRHTLTGHS----GKVLSAKFLLDNARIVSGSHDRTLKLWD
WD 3 99-134 KVCIKTVFAGS----S---CNDIVCTEQCVMSGHFDKKIRFWD
WD 4 137-175 SESIVREMELL----GKITALDLNPERTELLSCSRDDLLKVID
WD 5 179-221 NAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWS
WD 6 225-263 GKVEKVLSSTA----HPSMRWRGRPLARTLSVWTKDAKLCCGH
WD40 Template GECLRTLSGHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD