Input parameters:

  Query = ENSP00000340211 (Len=489)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000340211, Len=489):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFRKVVRQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFLVLPLSKTGRIDKAYPTVCG 80  
WD40-rpts                                                             (________________________

Query       81 HTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEGHTKRVGIIAWHPTARNVLLSAGCDNVVLIW 160 
WD40-rpts      _WD 1_________________________)          (_________________WD 2_________________

Query      161 NVGTAEELYRLDSLHPDLIYNVSWNHNGSLFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFS 240 
WD40-rpts      )(___________________WD 3__________________)   (___________________WD 4_________

Query      241 RMSERQLALWDPENLEEPMALQELDSSNGALLPFYDPDTSVVYVCGKGDSSIRYFEITEEPPYIHFLNTFTSKEPQRGMG 320 
WD40-rpts      __________)(____________________WD 5___________________) (__________________WD 6

Query      321 SMPKRGLEVSKCEIARFYKLHERKCEPIVMTVPRKSDLFQDDLYPDTAGPEAALEAEEWVSGRDADPILISLREAYVPSK 400 
WD40-rpts      __________________)                                                             

Query      401 QRDLKISRRNVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLARAGEAGKLEEVMQELRALRALVKEQGDRICRLEEQ 480 
WD40-rpts                                                                                      

Query      481 LGRMENGDA 489 
WD40-rpts               

6 WD40-repeats found in QUERY=ENSP00000340211 (Len=489):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    56-111      7.21  412.32  0.00017       37.5%     46.53
  WD 2:  Seg  9   122-161      6.78  394.90  0.00030       27.5%     51.24
  WD 3:  Seg 13   162-204      7.59  428.09  0.00011       27.5%     53.93
  WD 4:  Seg 17   208-251      3.93  277.20  0.01139       22.5%     46.44
  WD 5:  Seg 21   252-296      4.43  297.51  0.00608       17.5%     39.80
  WD 6:  Seg 25   298-339      4.58  303.97  0.00498       20.0%     29.87

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   56-111    GGGAFLVLPLSKTGRIDK--AYPTVC----GHTGP--VLDIDWCPHNDEV-I-ASG---SEDCTVMVWQ
   WD 2  122-161    -T---------------E--PVVVLE----GHTKR--VGIIAWHP-TARNVL-LSA---GCDNVVLIWN
   WD 3  162-204    VG------------TAEE--LYRLDS----LHPDL--IYNVSWNH-NGSL-F-CSA---CKDKSVRIID
   WD 4  208-251    -G---------------T--LVAERE----KAHEGARPMRAIFLA-DGKV-F-TTGFSRMSERQLALWD
   WD 5  252-296    PE---------------N--LEEPMALQELDSSNG--ALLPFYDP-DTSV-VYVCG---KGDSSIRYFE
   WD 6  298-339    TE---------------EPPYIHFLN----TFTSK--EPQRGMGS-MPKR-G-LEV---SKCEIARFYK

   WD40 Template    TG---------------E--CLRTLS----GHTSG--VTSVSFSP-DGKR-L-VSG---SEDGTIKVWD