WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000347909 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000347909 (Len=713) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000347909, Len=713): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDELAGGGGGGPGMAAPPRQQQGPGGNLGLSPGGNGAAGGGGPPASEGAGPAAGPELSRPQQYTIPGILHYIQHEWARFE 80
WD40-rpts
Query 81 MERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDLKMPTFESEETKDTE 160
WD40-rpts
Query 161 APTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRVRSLLGLSNSEPNGSVETKNLEQILNGGESPKQKGQEIKRS 240
WD40-rpts (_________________WD 1________________)
Query 241 SGDVLETFNFLENADDSDEDEENDMIEGIPEGKDKHRMNKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEA 320
WD40-rpts (_________________WD 2________________) (__
Query 321 RSSGDGTEWAEPITFPSGGGKSFIMGSDDVLLSVLGLGDLADLTVTNDADYSYDLPANKDAFRKTWNPKYTLRSHFDGVR 400
WD40-rpts _______________WD 3________________)(_____________WD 4____________)(____________
Query 401 ALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWWNMPS 480
WD40-rpts ____WD 5_______________) (_________________WD 6________________)
Query 481 PSVDPYDTYEPNVLAGTLVGHTDAVWGLAYSGIKNQLLSCSADGTVRLWNPQEKLPCICTYNGDKKHGIPTSVDFIGCDP 560
WD40-rpts (_________________WD 7________________)(____________________WD 8_____
Query 561 AHMVTSFNTGSAVIYDLETSQSLVILSSQVDSGLQSNNHINRVVSHPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLD 640
WD40-rpts _______________) (_________________WD 9________________) (___________
Query 641 AVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHSSKAYIASAGADALAKVFV 713
WD40-rpts ______WD10________________) (___________________WD11__________________)
 11 WD40-repeats found in QUERY=ENSP00000347909 (Len=713): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 187-225 4.60 304.83 0.00485 12.5% 0.99 WD 2: Seg 3 276-314 2.80 230.27 0.04799 7.5% 25.19 WD 3: Seg 5 318-356 6.85 397.46 0.00027 25.0% 40.45 WD 4: Seg 9 357-387 4.43 297.53 0.00607 15.0% 30.48 WD 5: Seg 12 388-424 9.14 492.29 1.4e-05 37.5% 45.76 WD 6: Seg 15 439-477 8.34 459.00 4.1e-05 32.5% 52.92 WD 7: Seg 19 492-530 8.68 473.28 2.6e-05 35.0% 46.10 WD 8: Seg 22 531-576 5.86 356.79 0.00097 20.0% 57.05 WD 9: Seg 27 587-625 6.63 388.33 0.00036 17.5% 43.69 WD10: Seg 30 629-667 9.97 526.32 5.0e-06 35.0% 55.24 WD11: Seg 34 671-713 6.63 388.66 0.00036 20.0% 50.90Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 187-225 -GY---TDTILDVRS----Q---RVRSLLGLSNSEPN--GSVETKNLEQILN WD 2 276-314 -HR---MNKHKIGNE----G---LAADLTDDPDTE--EALKEFDFLVTAEDG WD 3 318-356 -GE---ARSSGDGTE----W---AEPITFPSGGGKSF--IMGSDDVLLSVLG WD 4 357-387 LGD----------------L---ADLTVTNDADYSYD--LPANKDAFRKTWN WD 5 388-424 ------PKYTLRSHF----D---GVRALAFHPVEPVL--VTASEDHTLKLWN WD 6 439-477 -VE---PIYTFRAHI----G---PVLSLAISSNGEQC--FSGGIDATIQWWN WD 7 492-530 -NV---LAGTLVGHT----D---AVWGLAYSGIKNQL--LSCSADGTVRLWN WD 8 531-576 PQEKLPCICTYNGDK----KHGIPTSVDFIGCDPAHM--VTSFNTGSAVIYD WD 9 587-625 SSQ----VDSGLQSN----N---HINRVVSHPTLPVT--ITAHEDRHIKFFD WD10 629-667 -GK---MIHSMVAHL----D---AVTSLAVDPNGIYL--MSGSHDCSIRLWN WD11 671-713 -KT---CVQEITAHRKKLDE---SIYDVAFHSSKAYI--ASAGADALAKVFV WD40 Template TGE---CLRTLSGHT----S---GVTSVSFSPDGKRL--VSGSEDGTIKVWD |
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