Input parameters:
Query = ENSP00000348848 (Len=361)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000348848, Len=361):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSSPKFSEISAV 80
WD40-rpts (______________WD 1_____________)(___________________WD 2__________________)
Query 81 LIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLL 160
WD40-rpts (____________________WD 3_______
Query 161 VFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPAT 240
WD40-rpts _____________) (_________________WD 4_________________) (______________
Query 241 LYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKN 320
WD40-rpts ____WD 5_________________) (
Query 321 VNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDICDDDDF 361
WD40-rpts _________________WD 6________________)
6 WD40-repeats found in QUERY=ENSP00000348848 (Len=361):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-33 3.80 271.61 0.01353 15.0% 40.72
WD 2: Seg 4 34-76 2.92 235.28 0.04122 10.0% 40.10
WD 3: Seg 12 129-174 3.30 251.07 0.02545 22.5% 40.11
WD 4: Seg 16 183-222 6.99 403.26 0.00023 30.0% 50.10
WD 5: Seg 20 226-266 6.73 392.52 0.00032 27.5% 55.99
WD 6: Seg 26 320-358 2.87 233.12 0.04402 12.5% 31.18
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-33 ---------MT-----QQPL--RGVTSLRFNQDQSCFC-CAM-ETG-VRIYN
WD 2 34-76 VEPLMEKGHLD-----HEQV--GSMGLVEMLHRSNLLA-LVGGGSS-PKFSE
WD 3 129-174 FP---DNPRKLFEFDTRDNP--KGLCDLCPSLEKQLLVFPGHKCGS-LQLVD
WD 4 183-222 -S---SAPFTI-----NAHQ--SDIACVSLNQPGTVVA-SASQKGTLIRLFD
WD 5 226-266 -K---EKLVEL-----RRGTDPATLYCINFSHDSSFLC-ASSDKGT-VHIFA
WD 6 320-358 -N---VNSVIA-----ICVD--GTFHKYVFTPDGNCNR-EAFDVYL-DICDD
WD40 Template TG---ECLRTL-----SGHT--SGVTSVSFSPDGKRLV-SGSEDGT-IKVWD