WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000349568 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000349568 (Len=1665) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000349568, Len=1665): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAQGRERDEGPHSAGGASLSVRWVQGFPKQNVHFVNDNTICYPCGNYVIFINIETKKKTVLQCSNGIVGVMATNIPCEVV 80
WD40-rpts (__________________WD 1___
Query 81 AFSDRKLKPLIYVYSFPGLTRRTKLKGNILLDYTLLSFSYCGTYLASYSSLPEFELALWNWESSIILCKKSQPGMDVNQM 160
WD40-rpts ______________) (__________________WD 2__________________) (________________
Query 161 SFNPMNWRQLCLSSPSTVSVWTIERSNQEHCFRARSVKLPLEDGSFFNETDVVFPQSLPKDLIYGPVLPLSAIAGLVGKE 240
WD40-rpts _WD 3________________) (_______
Query 241 AETFRPKDDLYPLLHPTMHCWTPTSDLYIGCEEGHLLMINGDTLQVTVLNKIEEESPLDRRNFISPVTLVYQKEGVLASG 320
WD40-rpts ______________WD 4_____________________) (_________________WD 5_________
Query 321 IDGFVYSFIIKDRSYMIEDFLEIERPVEHMTFSPNYTVLLIQTDKGSVYIYTFGKEPTLNKVLDACDGKFQAIDFITPGT 400
WD40-rpts ________) (______________WD 6______________)(___________________WD 7____
Query 401 QYFMTLTYSGEICVWWLEDCACVSKIYLNTLATVLACCPSSLSAAVGTEDGSVYFISVYDKESPQVVHKAFLSESSVQHV 480
WD40-rpts _______________)(__________________WD 8_________________) (___________________W
Query 481 VYDQQGIFLLVGTAEGKVFIINANSSSSFQIIGFTEVAKDILQISTVSLLETDIVEVMVLSSLPEAGRSRLEMFTLPTLL 560
WD40-rpts D 9__________________)
Query 561 PQVSTTFADERGRLKDEIIHKYLYELEHALSSAVLGFQSNQIYGFCSQVPYICSYLLPEEEHTGIYILKPYKKVQSRQYG 640
WD40-rpts (____________
Query 641 PGLLYLSSHGLWLITIAKCGILCIRDVYTLETFAWCRSHSHQGHGIQSMRISMDGQNILVNGRDDGTLVYLKWKRFGGHL 720
WD40-rpts _____WD10________________) (__________________WD11__________________)
Query 721 ASEILDYYQKLLISLSSAMDKENHYLSTTPKVSVDLGSDSEHTKQKASTDLSQDELVLTDVKKEIPWIQQKSQEAIKKEV 800
WD40-rpts
Query 801 NLFSKKRKEIKQGIKSLSKTILNMMEENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKMIKDVEMHNLAKSYLAEL 880
WD40-rpts
Query 881 IKEECWNSMAVKGRALKCFHIPCVVENFPMKARTVEELKELERVLQQKKIEAECLKLRKEIVEAQSGVKLIKQRHEEDDE 960
WD40-rpts
Query 961 EEEEEDKTVKYSNLPNYLLGSLSTDFGVDTSLLSSQLELHSREEKINQIILLKDIIYKVKTVFNNEFDAAYKQKEFEIAR 1040
WD40-rpts
Query 1041 VKERNVRIREIILDLELEEAVWQPEFEDCEKPERTLVVQDEEITAHKHIKPWHKAKELIVNHEKEHWLLIQDASTRLRAL 1120
WD40-rpts
Query 1121 MDMMGGVLEVKKEDILRMVIPQPAFMAKPDAVWTEEERKQFKDYEKKVKELNEERDKYRKSLEAELKKLQNSIQESTQAF 1200
WD40-rpts
Query 1201 DEHLKRLFERRVKAEMVTNQEELKISNLAFSLLLDEELSSREKFLNNYLTRKQHEKSQTSEAVRKSREDLDVCKEHYDNL 1280
WD40-rpts
Query 1281 LAEDKVMDRSFKKEFSEIPGHQVDILYKLFKRRPRISKQKTHSETTSVVPFGELPGSGKLNKDAFAQLMKAMDELDNISN 1360
WD40-rpts
Query 1361 MPEGLDPLVWNHFCMTRRAKVENEQKVKQKAADLLEMATFLQKRVEEEEKVQQEIERVFHELILLQEEKVRFQLNLTIQI 1440
WD40-rpts
Query 1441 LLKQGQVELENFQLVLEYSDAILINKNIIEDLNSVIRTQGQKKVASMMESKDVHKRILQIEWEHKKMEMEREDLNQKAWD 1520
WD40-rpts
Query 1521 IQMLFFSRDRQKYLNEPNYEALISIQIGIMEQTIAVLDKMHKKNVENCKKLLKKLGKFSNQKDIANYALSCNLREELVAV 1600
WD40-rpts
Query 1601 SERKDICNAMGSKLTCEKIVKERYENMMQQQKLTNISKQQAEQISILQTEVERLRMKTFPALVQM 1665
WD40-rpts
 11 WD40-repeats found in QUERY=ENSP00000349568 (Len=1665): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 55-95 3.61 263.65 0.01730 10.0% 52.59 WD 2: Seg 9 99-140 4.37 295.34 0.00650 27.5% 52.34 WD 3: Seg 13 144-182 6.84 397.11 0.00028 27.5% 55.45 WD 4: Seg 18 233-280 3.25 248.92 0.02718 15.0% 26.89 WD 5: Seg 22 290-329 7.18 411.37 0.00018 7.5% 33.94 WD 6: Seg 25 339-372 5.43 339.10 0.00167 15.0% 46.74 WD 7: Seg 28 373-416 5.67 348.85 0.00124 20.0% 46.74 WD 8: Seg 31 417-457 5.75 352.06 0.00112 17.5% 51.38 WD 9: Seg 35 460-502 7.27 414.87 0.00016 20.0% 55.65 WD10: Seg 46 628-666 5.83 355.47 0.00101 15.0% 41.08 WD11: Seg 49 670-711 3.58 262.42 0.01796 22.5% 40.12Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 55-95 -TK---KK---------TVLQ-CSN---G-IVGVMAT-NIPCEVVAFSDRKL--KPLIYVYS WD 2 99-140 -LT---RR---------TKLK-GNI---LLDYTLLSF-SYCGTYLASY--SSLPEFELALWN WD 3 144-182 -SI---IL---------CKKS-QPG---M-DVNQMSF-NPMNWRQLCL--SS--PSTVSVWT WD 4 233-280 IAG---LVGKEAETFRPKDDL-YPL---L-HPTMHCW-TPTSD-LYIG--CE--EGHLLMIN WD 5 290-329 NKI---EE---------ESPL-DRR---N-FISPVTL-VYQKEGVLAS--GI--DGFVYSFI WD 6 339-372 ------------------DFL-EIE---R-PVEHMTF-SPNYTVLLIQ--TD--KGSVYIYT WD 7 373-416 FGKEPTLN---------KVLD-ACD---G-KFQAIDFITPGTQYFMTL--TY--SGEICVWW WD 8 417-457 LED---CA---------CVSKIYLN---T-LATVLAC-CPSSLSAAVG--TE--DGSVYFIS WD 9 460-502 DKESPQVV---------HKAF-LSE---S-SVQHVVY-DQQGIFLLVG--TA--EGKVFIIN WD10 628-666 -LK---PY---------KKVQ-SRQ---Y-GPGLLYL-SSHGLWLITI--AK--CGILCIRD WD11 670-711 -LE---TF---------AWCR-SHSHQGH-GIQSMRI-SMDGQNILVN--GR--DDGTLVYL WD40 Template TGE---CL---------RTLS-GHT---S-GVTSVSF-SPDGKRLVSG--SE--DGTIKVWD |
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