WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000350071    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000350071 (Len=797)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000350071, Len=797):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDELAGGGGGGPGMAAPPRQQQGPGGNLGLSPGGNGAAGGGGPPASEGAGPAAGPELSRPQQYTIPGILHYIQHEWARFE 80  
WD40-rpts                                                                                      

Query       81 MERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDLKMPTFESEETKDTE 160 
WD40-rpts                                                                                      

Query      161 APTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRVRSLLGLSNSEPNGSVETKNLEQILNGGESPKQKGQEIKRS 240 
WD40-rpts                                                                                      

Query      241 SGDVLETFNFLENADDSDEDEENDMIEGIPEGKDKHRMNKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEA 320 
WD40-rpts                                                                      (_______________

Query      321 RSSGDGTEWDKDDLSPTAEVWDVDQGLISKLKEQYKKERKGKKGVKRANRTKLYDMIADLGDDELPHIPSGIINQSRSAS 400 
WD40-rpts      _WD 1________________)               (______________WD 2_____________)          

Query      401 TRMTDHEGARAEEAEPITFPSGGGKSFIMGSDDVLLSVLGLGDLADLTVTNDADYSYDLPANKDAFRKTWNPKYTLRSHF 480 
WD40-rpts                                    (__________________WD 3_________________)(________

Query      481 DGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWW 560 
WD40-rpts      ________WD 4_______________)              (_________________WD 5________________

Query      561 NMPSPSVDPYDTYEPNVLAGTLVGHTDAVWGLAYSGIKNQLLSCSADGTVRLWNPQEKLPCICTYNGDKKHGIPTSVDFI 640 
WD40-rpts      )              (_________________WD 6________________)(____________________WD 7_

Query      641 GCDPAHMVTSFNTGSAVIYDLETSQSLVILSSQVDSGLQSNNHINRVVSHPTLPVTITAHEDRHIKFFDNKTGKMIHSMV 720 
WD40-rpts      ___________________)          (_________________WD 8________________)   (_______

Query      721 AHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHSSKAYIASAGADALAKVFV 797 
WD40-rpts      __________WD 9________________)   (___________________WD10__________________)



10 WD40-repeats found in QUERY=ENSP00000350071 (Len=797):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   305-342      7.05  405.96  0.00021       20.0%     29.17
  WD 2:  Seg  3   358-390      2.97  237.19  0.03889        7.5%      6.70
  WD 3:  Seg  7   431-471      6.55  385.34  0.00040       17.5%     35.88
  WD 4:  Seg 10   472-508      9.24  496.22  1.3e-05       37.5%     46.37
  WD 5:  Seg 13   523-561      8.49  465.45  3.3e-05       32.5%     52.21
  WD 6:  Seg 17   576-614      8.70  474.09  2.5e-05       35.0%     46.06
  WD 7:  Seg 20   615-660      6.04  364.03  0.00077       22.5%     48.97
  WD 8:  Seg 25   671-709      6.82  396.58  0.00028       17.5%     43.60
  WD 9:  Seg 28   713-751     10.06  530.31  4.4e-06       35.0%     54.58
  WD10:  Seg 32   755-797      6.79  395.23  0.00029       20.0%     51.11
Multiple sequence alignment of 10 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  305-342    --F---DFLVTAE-DG----EGAGEAR---SSGDGTEWDKDDLSPTAEVWD
   WD 2  358-390    ----------ERK-GK----KGVKRAN---RTKLYDMIADLGDDELPHIPS
   WD 3  431-471    SDD---VLLSVLGLGD----LADLTVT---NDADYSYDLPANKDAFRKTWN
   WD 4  472-508    ------PKYTLRS-HF----DGVRALA---FHPVEPVLVTASEDHTLKLWN
   WD 5  523-561    -VE---PIYTFRA-HI----GPVLSLA---ISSNGEQCFSGGIDATIQWWN
   WD 6  576-614    -NV---LAGTLVG-HT----DAVWGLA---YSGIKNQLLSCSADGTVRLWN
   WD 7  615-660    PQEKLPCICTYNG-DK----KHGIPTSVDFIGCDPAHMVTSFNTGSAVIYD
   WD 8  671-709    SSQ----VDSGLQ-SN----NHINRVV---SHPTLPVTITAHEDRHIKFFD
   WD 9  713-751    -GK---MIHSMVA-HL----DAVTSLA---VDPNGIYLMSGSHDCSIRLWN
   WD10  755-797    -KT---CVQEITA-HRKKLDESIYDVA---FHSSKAYIASAGADALAKVFV

   WD40 Template    TGE---CLRTLSG-HT----SGVTSVS---FSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019