WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000350967    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000350967 (Len=826)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000350967, Len=826):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVAPVLETSHVFCCPNRVRGVLNWSSGPRGLLAFGTSCSVVLYDPLKRVVVTNLNGHTARVNCIQWICKQDGSPSTELVS 80  
WD40-rpts          (_________________WD 1_________________)   (___________________WD 2_________

Query       81 GGSDNQVIHWEIEDNQLLKAVHLQGHEGPVYAVHAVYQRRTSDPALCTLIVSAAADSAVRLWSKKGPEVMCLQTLNFGNG 160 
WD40-rpts      __________)(_______________________WD 3_______________________)     (___________

Query      161 FALALCLSFLPNTDVPILACGNDDCRIHIFAQQNDQFQKVLSLCGHEDWIRGVEWAAFGRDLFLASCSQDCLIRIWKLYI 240 
WD40-rpts      ________WD 4__________________)     (__________________WD 5_________________)   

Query      241 KSTSLETQDDDNIRLKENTFTIENESVKIAFAVTLETVLAGHENWVNAVHWQPVFYKDGVLQQPVRLLSASMDKTMILWA 320 
WD40-rpts                                     (______________________WD 6_____________________)

Query      321 PDEESGVWLEQVRVGEVGGNTLGFYDCQFNEDGSMIIAHAFHGALHLWKQNTVNPREWTPEIVISGHFDGVQDLVWDPEG 400 
WD40-rpts      (______________________WD 7_____________________)            (_______________WD 

Query      401 EFIITVGTDQTTRLFAPWKRKDQSQVTWHEIARPQIHGYDLKCLAMINRFQFVSGADEKVLRVFSAPRNFVENFCAITGQ 480 
WD40-rpts      8______________)           (________________WD 9________________)   (___________

Query      481 SLNHVLCNQDSDLPEGATVPALGLSNKAVFQGDIASQPSDEEELLTSTGFEYQQVAFQPSILTEPPTEDHLLQNTLWPEV 560 
WD40-rpts      _________WD10___________________)  (__________________WD11_________________)(___

Query      561 QKLYGHGYEIFCVTCNSSKTLLASACKAAKKEHAAIILWNTTSWKQVQNLVFHSLTVTQMAFSPNEKFLLAVSRDRTWSL 640 
WD40-rpts      ________________WD12___________________)   (_________________WD13_______________

Query      641 WKKQDTISPEFEPVFSLFAFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECDSTDDCIEHNIGPCSSVLDVG 720 
WD40-rpts      _)                (_________________WD14________________)(______________________

Query      721 GAVTAVSVCPVLHPSQRYVVAVGLECGKICLYTWKKTDQVPEINDWTHCVETSQSQSHTLAIRKLCWKNCSGKTEQKEAE 800 
WD40-rpts      ___WD15_________________________)(_______________________________WD16___________

Query      801 GAEWLHFASCGEDHTVKIHRVNKCAL 826 
WD40-rpts      ___________________)      



16 WD40-repeats found in QUERY=ENSP00000350967 (Len=826):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       5.83  355.37  0.00101       10.0%     53.29
  WD 2:  Seg  5    48-91       6.78  394.78  0.00030       27.5%     55.92
  WD 3:  Seg  9    92-143      5.77  352.93  0.00109       22.5%     54.74
  WD 4:  Seg 13   149-191      5.54  343.42  0.00146       25.0%     54.92
  WD 5:  Seg 17   197-237      7.22  412.71  0.00017       27.5%     52.65
  WD 6:  Seg 24   272-320      7.93  442.28  6.8e-05       32.5%     52.15
  WD 7:  Seg 28   321-369      7.29  415.75  0.00016       22.5%     57.57
  WD 8:  Seg 32   382-416      7.69  432.49  9.2e-05       22.5%     49.44
  WD 9:  Seg 35   428-465      5.03  322.56  0.00280       12.5%     47.79
  WD10:  Seg 39   469-513      4.35  294.18  0.00674       10.0%     41.59
  WD11:  Seg 42   516-556      3.82  272.35  0.01323       15.0%     21.94
  WD12:  Seg 46   557-600      6.44  380.73  0.00046       22.5%     54.58
  WD13:  Seg 50   604-642      9.03  487.78  1.7e-05       32.5%     57.48
  WD14:  Seg 54   659-697      7.48  423.55  0.00012       30.0%     45.11
  WD15:  Seg 57   698-753      4.47  299.50  0.00571       22.5%     47.90
  WD16:  Seg 61   754-820      3.62  264.34  0.01693       17.5%     45.49
Multiple sequence alignment of 16 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-44     VLE---------T--------------SHV---FCCPNRVRGVLNWS----S-------------GPR--------G------LLAFG-----TSCSVVLYD
   WD 2   48-91     -RV---------V--------------VTN---LNGHTARVNCIQWI----C--------KQDGSPST--------E------LVSGG-----SDNQVIHWE
   WD 3   92-143    IED-----NQLLK--------------AVH---LQGHEGPVYAVHAV----Y-------------QRRTSDPALCTL------IVSAA-----ADSAVRLWS
   WD 4  149-191    -VM---------C--------------LQT---LNFGNGFALALCLSFLPNT-------------DVP--------I------LACGN-----DDCRIHIFA
   WD 5  197-237    -FQ---------K--------------VLS---LCGHEDWIRGVEWA----A-------------FGR------DLF------LASCS-----QDCLIRIWK
   WD 6  272-320    AVT---------L--------------ETV---LAGHENWVNAVHWQ----P----VFYKDGVLQQPV--------R------LLSAS-----MDKTMILWA
   WD 7  321-369    PDEESGVWLEQVR--------------VGE---VGGNTLGFYDCQFN----E-------------DGS--------M------IIAHA-----FHGALHLWK
   WD 8  382-416    ----------------------------IV---ISGHFDGVQDLVWD----P-------------EGE--------F------IITVG-----TDQTTRLFA
   WD 9  428-465    -WH---------E--------------IAR---PQIHGYDLKCLAMI----N-------------RFQ---------------FVSGA-----DEKVLRVFS
   WD10  469-513    -NF---------V--------------ENF---CAITGQSLNHVLCN----Q-------------DSD--------LPEGATVPALGL-----SNKAVFQGD
   WD11  516-556    -SQ---------P--------------SDEEELLTSTGFEYQQVAFQ----P-------------SI---------L------TEPPT-----EDHLLQNTL
   WD12  557-600    -WP---------E--------------VQK---LYGHGYEIFCVTCN----S-------------SKT--------L------LASACKAAKKEHAAIILWN
   WD13  604-642    -WK---------Q--------------VQN---LVFHSLTVTQMAFS----P-------------NEK--------F------LLAVS-----RDRTWSLWK
   WD14  659-697    -AF---------T--------------NKI---TSVHSRIIWSCDWS----P-------------DSK--------Y------FFTGS-----RDKKVVVWG
   WD15  698-753    ECD---------S---TDDCIEHNIGPCSS---VLDVGGAVTAVSVC----P--------VLHPSQRY--------V------VAVGL-----ECGKICLYT
   WD16  754-820    WKK---------TDQVPEINDWTHCVETSQ---SQSHTLAIRKLCWK----NCSGKTEQKEAEGAEWL--------H------FASCG-----EDHTVKIHR

   WD40 Template    TGE---------C--------------LRT---LSGHTSGVTSVSFS----P-------------DGK--------R------LVSGS-----EDGTIKVWD


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Last modified: 09 Jan 2019