WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000351147    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000351147 (Len=495)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000351147, Len=495):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGTSSVPELPGFYFDPEKKRYFR 80  
WD40-rpts                                                                                      

Query       81 LLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIARMGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQ 160 
WD40-rpts                                                                               (______

Query      161 IRSMDPSALASDRFNLILADTNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS 240 
WD40-rpts      __________WD 1________________)                                          (______

Query      241 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCFSTGLSRRVLLTNVVTGHRQS 320 
WD40-rpts      ___________WD 2________________)                               (________________

Query      321 FGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGKGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLR 400 
WD40-rpts      ______WD 3_____________________)       (_________________WD 4________________)  

Query      401 TTKCVRQYEGHVNEYAYLPLHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG 480 
WD40-rpts       (__________________WD 5_________________)   (______________________WD 6________

Query      481 LLMAVGQDLYCYSYS 495 
WD40-rpts      ______________)



6 WD40-repeats found in QUERY=ENSP00000351147 (Len=495):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   154-191      6.17  369.47  0.00065       10.0%     27.55
  WD 2:  Seg  7   234-272      3.70  267.69  0.01527       17.5%      9.30
  WD 3:  Seg 11   304-352      7.33  417.63  0.00015       25.0%     53.68
  WD 4:  Seg 15   360-398      8.54  467.28  3.1e-05       35.0%     46.98
  WD 5:  Seg 18   402-442      7.45  422.30  0.00013       20.0%     57.08
  WD 6:  Seg 22   446-495      4.94  318.88  0.00314       22.5%     43.52
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  154-191    --MER---------KKV----QIRSM-DPS--ALASDRFN-------LILADTNS-DRLFTVND
   WD 2  234-272    ---SL---------NHL----DSHILLCLM--GLAETPGC-------ATLLPASLFVNSHPGID
   WD 3  304-352    LSRRVLLTNVVTGHRQS----FGTNS-DVL--AQQFALMA-------PLLFNGCR-SGEIFAID
   WD 4  360-398    -KGWK---------ATR----LFHDS-AVT--SVRILQDE-------QYLMASDM-AGKIKLWD
   WD 5  402-442    -TKCV---------RQY----EGHVN-EYAYLPLHVHEEE-------GILVAVGQ-DCYTRIWS
   WD 6  446-495    -ARLL---------RTIPSPYPASKA-DIP--SVAFSSRLGGSRGAPGLLMAVGQ-DLYCYSYS

   WD40 Template    TGECL---------RTL----SGHTS-GVT--SVSFSPDG-------KRLVSGSE-DGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019