WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000353699 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000353699 (Len=1102) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000353699, Len=1102): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRTSLQAVALWGQKAPPHSITAIMITDDQRTIVTGSQEGQLCLWNLSHELKISAKELLFGHSASVTCLARARDFSKQPYI 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2_____
Query 81 VSAAENGEMCVWNVTNGQCMEKATLPYRHTAICYYHCSFRMTGEGWLLCCGEYQDVLIIDAKTLAVVHSFRSSQFPDWIN 160
WD40-rpts ____________) (____________________WD 3___________________) (_________
Query 161 CMCIVHSMRIQEDSLLVVSVAGELKVWDLSSSINSIQEKQDVYEKESKFLESLNCQTIRFCTYTERLLLVVFSKCWKVYD 240
WD40-rpts _______WD 4________________)(_______________________WD 5_______________________)
Query 241 YCDFSLLLTEVSRNGQFFAGGEVIAAHRILIWTEDGHSYIYQLLNSGLSKSIYPADGRVLKETIYPHLLCSTSVQENKEQ 320
WD40-rpts (_________________WD 6________________) (_______
Query 321 SRPFVMGYMNERKEPFYKVLFSGEVSGRITLWHIPDVPVSKFDGSPREIPVTATWTLQDNFDKHDTMSQSIIDYFSGLKD 400
WD40-rpts ___________WD 7_________________) (
Query 401 GAGTAVVTSSEYIPSLDKLICGCEDGTIIITQALNAAKARLLEGGSLVKDSPPHKVLKGHHQSVTSLLYPHGLSSKLDQS 480
WD40-rpts ______________WD 8_____________) (________________________WD 9_________
Query 481 WMLSGDLDSCVILWDIFTEEILHKFFLEAGPVTSLLMSPEKFKLRGEQIICCVCGDHSVALLHLEGKSCLLHARKHLFPV 560
WD40-rpts ______________) (____________________WD10___________________) (_____________
Query 561 RMIKWHPVENFLIVGCADDSVYIWEIETGTLERHETGERARIILNCCDDSQLVKSVLPIASETLKHKSIEQRSSSPYQLG 640
WD40-rpts ____WD11________________) (_________________W
Query 641 PLPCPGLQVESSCKVTDAKFCPRPFNVLPVKTKWSNVGFHILLFDLENLVELLLPTPLSDVDSSSSFYGGEVLRRAKSTV 720
WD40-rpts D12_________________) (___________________________WD13____________________
Query 721 EKKTLTLRKSKTACGPLSAEALAKPITESLAQGDNTIKFSEENDGIKRQKKMKISKKMQPKPSRKVDASLTIDTAKLFLS 800
WD40-rpts _______)
Query 801 CLLPWGVDKDLDYLCIKHLNILKLQGPISLGISLNEDNFSLMLPGWDLCNSGMIKDYSGVNLFSRKVLDLSDKYTATLPN 880
WD40-rpts
Query 881 QVGIPRGLENNCDSLRESDTIVYLLSRLFLVNKLVNMPLELACRVGSSFRMESIHNKMRGAGNDILNMSSFYSCLRNGKN 960
WD40-rpts
Query 961 ESHVPEADLSLLKLISCWRDQSVQVTEAIQAVLLAEVQQHMKSLGKIPVNSQPVSMAENGNCEMKQMLPKLEWTEELELQ 1040
WD40-rpts
Query 1041 CVRNTLPLQTPVSPVKHDSNSNSANFQDVEDMPDRCALEESESPGEPRHHSWIAKVCPCKVS 1102
WD40-rpts
 13 WD40-repeats found in QUERY=ENSP00000353699 (Len=1102): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 6-45 7.17 410.80 0.00018 20.0% 49.62 WD 2: Seg 6 54-93 6.69 391.21 0.00033 30.0% 47.00 WD 3: Seg 9 97-141 3.51 259.79 0.01947 15.0% 50.43 WD 4: Seg 14 151-188 5.77 353.00 0.00109 25.0% 31.84 WD 5: Seg 17 189-240 4.85 315.21 0.00351 15.0% 45.69 WD 6: Seg 20 244-282 6.07 365.54 0.00074 15.0% 50.15 WD 7: Seg 26 313-353 6.03 363.86 0.00078 25.0% 26.81 WD 8: Seg 32 400-432 6.57 386.13 0.00039 32.5% 46.86 WD 9: Seg 35 443-495 7.18 411.15 0.00018 35.0% 45.30 WD10: Seg 39 499-543 6.15 368.56 0.00067 20.0% 55.90 WD11: Seg 43 547-585 8.63 471.18 2.8e-05 22.5% 53.96 WD12: Seg 50 622-661 6.06 364.86 0.00075 12.5% 28.08 WD13: Seg 54 669-728 3.43 256.35 0.02165 7.5% 5.21Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 6-45 QA-V----------AL-------WG----------QK------------APPHS------ITAIMI------TDD---Q------RTIVTGSQEGQLCLWN WD 2 54-93 --------------AK-------EL----------LF------------GHSAS------VTCLAR------ARDFSKQ------PYIVSAAENGEMCVWN WD 3 97-141 -G-Q----------CM-------EK----------AT------------LPYRHTAICYYHCSFRM------TGE---G------WLLCCGEYQDVLIIDA WD 4 151-188 RS-S----------QF-------PD----------WI------------NCMCI------VHSMRI------QED---S--------LLVVSVAGELKVWD WD 5 189-240 LS-S----------SI-------NS----------IQEKQDVYEKESKFLESLN------CQTIRF------CTY---T------ERLLLVVFSKCWKVYD WD 6 244-282 -F-S----------LL-------LT----------EV------------SRNGQ------FFAGGE------VIA---A------HRILIWTEDGHSYIYQ WD 7 313-353 SVQE----------NK-------EQ----------SR------------PFVMG------YMNERK------EPF---Y------KVLFSGEVSGRITLWH WD 8 400-432 DG-----------------------------------------------AGTAV------VTSSEY------IPS---L------DKLICGCEDGTIIITQ WD 9 443-495 EG-G----------SLVKDSPPHKV----------LK------------GHHQS------VTSLLYPHGLSSKLD---Q------SWMLSGDLDSCVILWD WD10 499-543 -E-E----------IL-------HK----------FF------------LEAGP------VTSLLM------SPE---KFKLRGEQIICCVCGDHSVALLH WD11 547-585 -K-S----------CL-------LH----------AR------------KHLFP------VRMIKW------HPV---E------NFLIVGCADDSVYIWE WD12 622-661 ET-L----------KH-------KS----------IE------------QRSSS------PYQLGP------LPC---P------GLQVESSCKVTDAKFC WD13 669-728 PV-KTKWSNVGFHILL-------FDLENLVELLLPTP------------LSDVD------SSSSFY------GGE---V------LRRAKSTVEKKTLTLR WD40 Template TG-E----------CL-------RT----------LS------------GHTSG------VTSVSF------SPD---G------KRLVSGSEDGTIKVWD |
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