WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000354075    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000354075 (Len=193)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000354075, Len=193):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQ 80  
WD40-rpts                                    (_______________WD 1______________)    (__________

Query       81 ALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDL 160 
WD40-rpts      _______WD 2________________)   (_________________WD 3________________)   (______

Query      161 PGHADEVYAVDWSPDGQRVASGGKDKCLRIWRR 193 
WD40-rpts      ___________WD 4________________) 



4 WD40-repeats found in QUERY=ENSP00000354075 (Len=193):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    31-65       8.26  455.68  4.5e-05       25.0%     42.75
  WD 2:  Seg  6    70-108     10.03  528.96  4.6e-06       37.5%     52.65
  WD 3:  Seg 10   112-150     11.00  569.10  1.3e-06       47.5%     54.48
  WD 4:  Seg 14   154-192     10.12  532.56  4.1e-06       35.0%     46.07
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   31-65     ----QELKERALSRYNLVRGQGPERLVSGSDDFTLFLWS
   WD 2   70-108    KKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWD
   WD 3  112-150    GKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWD
   WD 4  154-192    QKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIWR

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019