Input parameters:
Query = ENSP00000354075 (Len=193)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000354075, Len=193):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQ 80
WD40-rpts (_______________WD 1______________) (__________
Query 81 ALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDL 160
WD40-rpts _______WD 2________________) (_________________WD 3________________) (______
Query 161 PGHADEVYAVDWSPDGQRVASGGKDKCLRIWRR 193
WD40-rpts ___________WD 4________________)
4 WD40-repeats found in QUERY=ENSP00000354075 (Len=193):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 31-65 8.26 455.68 4.5e-05 25.0% 42.75
WD 2: Seg 6 70-108 10.03 528.96 4.6e-06 37.5% 52.65
WD 3: Seg 10 112-150 11.00 569.10 1.3e-06 47.5% 54.48
WD 4: Seg 14 154-192 10.12 532.56 4.1e-06 35.0% 46.07
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 31-65 ----QELKERALSRYNLVRGQGPERLVSGSDDFTLFLWS
WD 2 70-108 KKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWD
WD 3 112-150 GKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWD
WD 4 154-192 QKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIWR
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD