WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000354078    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000354078 (Len=905)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000354078, Len=905):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTLTERLREKISRAFYNHGLLCASYPIPIILIGYFTLVPAIQEFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLN 80  
WD40-rpts                                                                                      

Query       81 KRLPPEACLPSAKPVGQPTRYERQLAVRPSTPHTITLQPSSFRNLRLPKRLRVVYFLARTRLAQRLIMAGTVVWIGILVY 160 
WD40-rpts                                                                                      

Query      161 TDPAGLRNYLAAQVTEQSPLGEGALAPMPVPSGMLPPSHPDPAFSIFPPDAPKLPENQTSPGESPERGGPAEVVHDSPVP 240 
WD40-rpts                                                                                      

Query      241 EVTWGPEDEELWRKLSFRHWPTLFSYYNITLAKRYISLLPVIPVTLRLNPREALEGRHPQDGRSAWPPPGPIPAGHWEAG 320 
WD40-rpts                                                                                      

Query      321 PKGPGGVQAHGDVTLYKVAALGLATGIVLVLLLLCLYRVLCPRNYGQLGGGPGRRRRGELPCDDYGYAPPETEIVPLVLR 400 
WD40-rpts                                                                                      

Query      401 GHLMDIECLASDGMLLVSCCLAGHVCVWDAQTGDCLTRIPRPGQRRDSGVGSGLEAQESWERLSDGGKAGPEEPGDSPPL 480 
WD40-rpts       (___________WD 1___________)                                                   

Query      481 RHRPRGPPPPSLFGDQPDLTCLIDTNFSAQPRSSQPTQPEPRHRAVCGRSRDSPGYDFSCLVQRVYQEEGLAAVCTPALR 560 
WD40-rpts                              (______________WD 2_____________)   (_________________WD

Query      561 PPSPGPVLSQAPEDEGGSPEKGSPSLAWAPSAEGSIWSLELQGNLIVVGRSSGRLEVWDAIEGVLCCSSEEVSSGITALV 640 
WD40-rpts       3________________)      (______________WD 4______________)   (________________W

Query      641 FLDKRIVAARLNGSLDFFSLETHTALSPLQFRGTPGRGSSPASPVYSSSDTVACHLTHTVPCAHQKPITALKAAAGRLVT 720 
WD40-rpts      D 5_______________)                                       (______________WD 6___

Query      721 GSQDHTLRVFRLEDSCCLFTLQGHSGAITTVYIDQTMVLASGGQDGAICLWDVLTGSRVSHVFAHRGDVTSLTCTTSCVI 800 
WD40-rpts      __________)   (________________WD 7________________)   (________________WD 8____

Query      801 SSGLDDLISIWDRSTGIKFYSIQQDLGCGASLGVISDNLLVTGGQGCVSFWDLNYGDLLQTVYLGKNSEAQPARQILVLD 880 
WD40-rpts      ___________)   (________________WD 9_______________)   (___________________WD10_

Query      881 NAAIVCNFGSELSLVYVPSVLEKLD 905 
WD40-rpts      __________________)      



10 WD40-repeats found in QUERY=ENSP00000354078 (Len=905):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   402-429      4.16  286.31  0.00859       25.0%     38.18
  WD 2:  Seg 15   505-537      3.11  242.99  0.03259       10.0%     -0.60
  WD 3:  Seg 16   541-579      3.58  262.46  0.01794        7.5%     22.54
  WD 4:  Seg 19   586-619      5.55  344.12  0.00143       22.5%     45.24
  WD 5:  Seg 22   623-659      5.81  354.80  0.00103       22.5%     52.40
  WD 6:  Seg 28   699-731      5.70  349.94  0.00120       30.0%     37.85
  WD 7:  Seg 31   735-772      8.07  447.84  5.7e-05       40.0%     53.81
  WD 8:  Seg 35   776-812      6.70  391.39  0.00033       25.0%     52.50
  WD 9:  Seg 39   816-852      5.02  321.85  0.00286       17.5%     53.07
  WD10:  Seg 43   856-899      3.56  261.72  0.01835       22.5%     34.41
Multiple sequence alignment of 10 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  402-429    ----------HLMDIECL-----ASDGMLLVS--CCLAGHVCVWD
   WD 2  505-537    T-------NFSAQPRSSQP---TQPEPRHRAV--CGRSRDSPGYD
   WD 3  541-579    -LVQRVYQEEGLAAVCTPA---LRPPSPGPVL--SQAPEDEGGSP
   WD 4  586-619    ----LAWAPSAEGSIWSLE---L--QGNLIVV--GRSSGRLEVWD
   WD 5  623-659    -GVLCCSSEEVSSGITALV---FL--DKRIVA--ARLNGSLDFFS
   WD 6  699-731    TVPC-----AHQKPITAL-----KAAAGRLVT--GSQDHTLRVFR
   WD 7  735-772    -SCCLFTLQGHSGAITTVY---ID-QTMVLAS--GGQDGAICLWD
   WD 8  776-812    -GSRVSHVFAHRGDVTSLT---CTTS--CVIS--SGLDDLISIWD
   WD 9  816-852    -GIKFYSIQQDLGCGASLG---VISDN--LLV--TGGQGCVSFWD
   WD10  856-899    -GDLLQTVYLGKNSEAQPARQILVLDNAAIVCNFGSELSLVYVPS

   WD40 Template    TGECLRTLSGHTSGVTSVS---FSPDGKRLVS--GSEDGTIKVWD


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Last modified: 09 Jan 2019