WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000356450    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000356450 (Len=1098)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000356450, Len=1098):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKFNIRKVLDGLTAGSSSASQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQKILAVGTQTGA 80  
WD40-rpts                                                     (________________WD 1____________

Query       81 LRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAILHSLKFCRERVTFCHLPFQSKWLYVG 160 
WD40-rpts      ____)  (_________________WD 2________________)     (_________________WD 3_______

Query      161 TERGNIHIVNVESFTLSGYVIMWNKAIELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEAI 240 
WD40-rpts      _________)             (__________________WD 4_________________)  (_____________

Query      241 HSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHGKQLKDGKKPEPCKPILKVEFKTTRSGEPFIILSGGLSYDT 320 
WD40-rpts      ____WD 5________________)                                                       

Query      321 VGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPVT 400 
WD40-rpts                         (_________________WD 6_________________)                     

Query      401 CCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTSK 480 
WD40-rpts                        (____________________WD 7____________________)                

Query      481 VFEKSRNKDDRPNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVITEVIPMLEVRLLYEINDVETPEGE 560 
WD40-rpts          (____________________WD 8___________________)                               

Query      561 QPPPLPTPVGGSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLAVNSS 640 
WD40-rpts                                                                     (______________WD

Query      641 YGLVVFGNCNGIAMVDYLQKAVLLNLGTIELYGSNDPYRREPRSPRKSRQPSGAGLCDISEGTVVPEDRCKSPTSDVKDN 720 
WD40-rpts       9______________)                                                               

Query      721 SFSRSRSSSVTSIDKESREAISALHFCETFTRKTDSSPSPCLWVGTTLGTVLVIALNLPPGGEQRLLQPVIVSPSGTILR 800 
WD40-rpts                                                           (_________________WD10_____

Query      801 LKGAILRMAFLDTTGCLIPPAYEPWREHNVPEEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVISLPTQNC 880 
WD40-rpts      ___________)                                                                    

Query      881 AYKQNITETSFVLRGDIVALSNSICLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCFTNNGQALYLVSPTEI 960 
WD40-rpts                                                                                      

Query      961 QRLTYSQETCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRSLAQHIPGPGGIEGVKGA 1040
WD40-rpts                                                                                      

Query     1041 ASGVVGELARARLALDERGQKLGDLEERTAAMLSSAESFSKHAHEIMLKYKDKKWYQF 1098
WD40-rpts                                                                



10 WD40-repeats found in QUERY=ENSP00000356450 (Len=1098):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    48-85       6.20  370.73  0.00063       20.0%     43.11
  WD 2:  Seg  5    88-126      6.45  381.09  0.00045       22.5%     56.30
  WD 3:  Seg  9   132-170      6.02  363.48  0.00079       25.0%     55.58
  WD 4:  Seg 14   184-224      7.31  416.66  0.00015       30.0%     48.10
  WD 5:  Seg 17   227-265      6.84  397.05  0.00028       20.0%     54.83
  WD 6:  Seg 27   340-379      4.36  294.70  0.00663        7.5%     16.64
  WD 7:  Seg 34   419-464      5.61  346.41  0.00133       20.0%     38.40
  WD 8:  Seg 40   485-529      4.47  299.41  0.00573        7.5%     45.04
  WD 9:  Seg 45   624-657      3.47  258.13  0.02049       17.5%     45.91
  WD10:  Seg 51   774-812      3.10  242.87  0.03271       17.5%     19.00
Multiple sequence alignment of 10 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   48-85     --L------CKTVRHGFPYQPSALAFDP-VQKILAVGTQTGALRLFG
   WD 2   88-126    -GV------ECYCQHDSGAAVIQLQFLI-NEGALVSALADDTLHLWN
   WD 3  132-170    -PA------ILHSLKFCRERVTFCHLPF-QSKWLYVGTERGNIHIVN
   WD 4  184-224    NKA------IELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWD
   WD 5  227-265    -SK------KADYRYTYDEAIHSVAWHH-EGKQFICSHSDGTLTIWN
   WD 6  340-379    MDY------SIVDFLTLCETPYPNDFQE-PYAVVVLLEKDLVLIDLA
   WD 7  419-464    VGARQKRQGYSKKEWPINGGNWGLGAQS-YPEIIITGHADGSVKFWD
   WD 8  485-529    SRN-KDDRPNTDIVDEDPYAIQIISWCP-ESRMLCIAGVSAHVIIYR
   WD 9  624-657    VG------------GEPPQQITSLAVNS-SYGLVVFGNCNGIAMVDY
   WD10  774-812    -IA------LNLPPGGEQRLLQPVIVSP-SGTILRLKGAILRMAFLD

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019