WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000362372 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000362372 (Len=1802) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000362372, Len=1802): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAAPTQIEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVAANAHIPPDYLLKICERIG 80
WD40-rpts (
Query 81 PLLDKEIPQSVPGVQTLLGVGRQSLLRDAKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSARQLTGCSRFGH 160
WD40-rpts _________________WD 1________________)
Query 161 IFPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLIAAG 240
WD40-rpts (_________________WD 2________________) (_________________WD 3_______
Query 241 SCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNRYLTSTGADGTICFWQWHVKTMKFRDRPVKFTERSRPGVQ 320
WD40-rpts _________)(____________________WD 4____________________) (______________
Query 321 ISCSSFSSGGMFITTGSTDHVIRIYYLGSEVPEKIAELESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKS 400
WD40-rpts ____WD 5_________________)(____________________WD 6____________________)
Query 401 IVLDMATKMTGNNLPSGEDKITKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTLSGHDDEVFVLEAHPFDQRI 480
WD40-rpts (_____________________WD 7_____________________) (_________________WD 8____
Query 481 ILSAGHDGNIFIWDLDRGTKIRNYFNMIEGQGHGAVFDCKFSPDGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTD 560
WD40-rpts _____________) (_________________WD 9________________)
Query 561 YRPLIRDANNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKFQRLVPGRENCKDEQLIPQLGYVANGDGEVVEQVIGQQTN 640
WD40-rpts
Query 641 DQDESILDGIIRELQREQDLRLINEGDVPHLPVNRAYSVNGALRSPNMDISSSPNIRLRRHSSQIEGVRQMHNNAPRSQM 720
WD40-rpts (_____________________WD10____________
Query 721 ATERDLMAWSRRVVVNELNNGVSRVQEECRTAKGDIEISLYTVEKKKKPSYTTQRNDYEPSCGRSLRRTQRKRQHTYQTR 800
WD40-rpts _________)
Query 801 SNIEHNSQASCQNSGVQEDSDSSSEEDETVGTSDASVEDPVVEWQSESSSSDSSSEYSDWTADAGINLQPPKRQTRQTTR 880
WD40-rpts
Query 881 KICSSSDEENLKSLEERQKKPKQTRKKKGGLVSIAGEPNEEWFAPQWILDTIPRRSPFVPQMGDELIYFRQGHEAYVRAV 960
WD40-rpts
Query 961 RKSKIYSVNLQKQPWNKMDLREQEFVKIVGIKYEVGPPTLCCLKLAFLDPISGKMTGESFSIKYHDMPDVIDFLVLHQFY 1040
WD40-rpts
Query 1041 NEAKERNWQIGDRFRSIIDDAWWFGTVESQQPFQPEYPDSSFQCYSVHWDNNEREKMSPWDMEPIPEGTAFPDEVGAGVP 1120
WD40-rpts
Query 1121 VSQEELTALLYKPQEGEWGAHSRDEECERVIQGINHLLSLDFASPFAVPVDLSAYPLYCTVVAYPTDLNTIRRRLENRFY 1200
WD40-rpts
Query 1201 RRISALMWEVRYIEHNARTFNEPDSPIVKAAKIVTDVLLRFIGDQSCTDILDTYNKIKAEERNSTDAEEDTEIVDLDSDG 1280
WD40-rpts
Query 1281 PGTSSGRKVKCRGRRQSLKCNPDAWKKQCKELLSLIYEREDSEPFRQPADLLSYPGHQEQEGESSESVVPERQQDSSLSE 1360
WD40-rpts
Query 1361 DYQDVIDTPVDFSTVKETLEAGNYGSPLEFYKDVRQIFNNSKAYTSNKKSRIYSMMLRLSALFESHIKNIISEYKSAIQS 1440
WD40-rpts
Query 1441 QKRRRPRYRKRLRSSSSSLSSSGAPSPKGKQKQMKLQPKNDQNTSVSHARTSSPFSSPVSDAAEGLSLYLLDDEPDGPFS 1520
WD40-rpts
Query 1521 SSSFGGYSRSGNSHDPGKAKSFRNRVLPVKQDHSLDGPLTNGDGREPRTGIKRKLLSASEEDENMGGEDKEKKETKEKSH 1600
WD40-rpts
Query 1601 LSTSESGELGSSLSSESTCGSDSDSESTSRTDQDYVDGDHDYSKFIQTRPKRKLRKQHGNGKRNWKTRGTGGRGRWGRWG 1680
WD40-rpts
Query 1681 RWSRGGRGRGGRGRGSRGRGGGGTRGRGRGRGGRGASRGATRAKRARIADDEFDTMFSGRFSRLPRIKTRNQGRRTVLYN 1760
WD40-rpts
Query 1761 DDSDNDNFVSTEDPLNLGTSRSGRVRKMTEKARVSHLMGWNY 1802
WD40-rpts
 10 WD40-repeats found in QUERY=ENSP00000362372 (Len=1802): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 80-118 3.92 276.67 0.01158 12.5% 36.06 WD 2: Seg 8 170-208 8.61 470.51 2.8e-05 32.5% 48.42 WD 3: Seg 12 212-250 8.97 485.10 1.8e-05 27.5% 53.22 WD 4: Seg 16 251-296 7.76 435.28 8.5e-05 37.5% 52.55 WD 5: Seg 21 306-346 6.66 389.73 0.00035 25.0% 47.76 WD 6: Seg 25 347-392 8.15 451.37 5.1e-05 45.0% 51.95 WD 7: Seg 30 404-451 4.93 318.42 0.00318 22.5% 44.05 WD 8: Seg 33 455-494 8.15 451.49 5.1e-05 40.0% 55.39 WD 9: Seg 38 503-541 5.56 344.41 0.00142 22.5% 43.92 WD10: Seg 50 683-730 2.85 232.40 0.04498 12.5% 23.46Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 80-118 GP----LL--DKE--------IPQSVPG--------VQTL-LGV-G----RQSL--LRDAKDCKSTLWN WD 2 170-208 -I----KM--HKR--------ILGHLSS--------VYCVAFDR-S----GRRI--FTGSDDCLVKIWA WD 3 212-250 -G----RL--LAT--------LRGHSAE--------ISDMAVNY-E----NTLI--AAGSCDKVVRVWC WD 4 251-296 LR----TCAPVAV--------LQGHSAS--------ITSIQFCP-STKGTNRYL--TSTGADGTICFWQ WD 5 306-346 DR----PV--KFT-------ERSRPGVQ--------ISCSSFSS-G----GMFI--TTGSTDHVIRIYY WD 6 347-392 LGSEVPEK--IAE--------LESHTDK--------VVAVQFCN-N----GDSLRFVSGSRDGTARIWQ WD 7 404-451 DM----AT--KMT--------GNNLPSGEDKITKLKVTMVAWDR-Y----DTTV--ITAVNNFLLKVWN WD 8 455-494 -G----QL--LHT--------LSGHDDE--------VFVLEAHPFD----QRII--LSAGHDGNIFIWD WD 9 503-541 NY----FN--MIE--------GQGH-GA--------VFDCKFSP-D----GNHF--ACTDSHGHLLLFG WD10 683-730 LR----SP--NMDISSSPNIRLRRHSSQ--------IEGVRQMH-N----NAPR--SQMATERDLMAWS WD40 Template TG----EC--LRT--------LSGHTSG--------VTSVSFSP-D----GKRL--VSGSEDGTIKVWD |
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