Input parameters:
Query = ENSP00000365536 (Len=292)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000365536, Len=292):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTS 80
WD40-rpts (_____________________WD 1____________________) (
Query 81 SAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVH 160
WD40-rpts _________________WD 2_________________) (__________________WD 3_______________
Query 161 IFALKDTRLNRRSAYVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGACTFLFS 240
WD40-rpts __) (________________________WD 4___________
Query 241 IAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS 292
WD40-rpts ____________)
4 WD40-repeats found in QUERY=ENSP00000365536 (Len=292):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 25-71 5.90 358.26 0.00092 20.0% 37.61
WD 2: Seg 7 80-119 7.59 428.28 0.00011 30.0% 50.15
WD 3: Seg 11 123-163 7.12 408.79 0.00019 27.5% 56.64
WD 4: Seg 16 201-253 6.12 367.49 0.00069 7.5% 43.49
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 25-71 METGVRIYNVEPLMEKGH--LGLCDLCPSLEKQLLVFPGHKCGS-LQLV-------------D
WD 2 80-119 -SSAPF------TINAHQ--SDIACVSLNQPGTVVA-SASQKGTLIRLF-------------D
WD 3 123-163 -KEKLV------ELRRGTDPATLYCINFSHDSSFLC-ASSDKGT-VHIF-------------A
WD 4 201-253 TRAAVR------RCRRSH--PAACLAAVLAVGLLVL-WVAGGAC-TFLFSIAGPVLLILVHAS
WD40 Template TGECLR------TLSGHT--SGVTSVSFSPDGKRLV-SGSEDGT-IKVW-------------D