WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000365536    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000365536 (Len=292)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000365536, Len=292):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTS 80  
WD40-rpts                              (_____________________WD 1____________________)        (

Query       81 SAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVH 160 
WD40-rpts      _________________WD 2_________________)   (__________________WD 3_______________

Query      161 IFALKDTRLNRRSAYVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGACTFLFS 240 
WD40-rpts      __)                                     (________________________WD 4___________

Query      241 IAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS 292 
WD40-rpts      ____________)                                       



4 WD40-repeats found in QUERY=ENSP00000365536 (Len=292):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-71       5.90  358.26  0.00092       20.0%     37.61
  WD 2:  Seg  7    80-119      7.59  428.28  0.00011       30.0%     50.15
  WD 3:  Seg 11   123-163      7.12  408.79  0.00019       27.5%     56.64
  WD 4:  Seg 16   201-253      6.12  367.49  0.00069        7.5%     43.49
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   25-71     METGVRIYNVEPLMEKGH--LGLCDLCPSLEKQLLVFPGHKCGS-LQLV-------------D
   WD 2   80-119    -SSAPF------TINAHQ--SDIACVSLNQPGTVVA-SASQKGTLIRLF-------------D
   WD 3  123-163    -KEKLV------ELRRGTDPATLYCINFSHDSSFLC-ASSDKGT-VHIF-------------A
   WD 4  201-253    TRAAVR------RCRRSH--PAACLAAVLAVGLLVL-WVAGGAC-TFLFSIAGPVLLILVHAS

   WD40 Template    TGECLR------TLSGHT--SGVTSVSFSPDGKRLV-SGSEDGT-IKVW-------------D


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Last modified: 09 Jan 2019