Input parameters:
Query = ENSP00000367320 (Len=644)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000367320, Len=644):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFLTYMETVTKELVSWMRGHESSVFSISVHASGKYAITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQKVFFLPLSNTILS 80
WD40-rpts (________________WD 1________________)(___________________WD 2________
Query 81 CFKDNSIFAWECDTLFCKYQLPAPPESSSILYKVFAVTRDGRILAAGGKSNHLHLWCLEARQLFRIIQMPTKVRAIRHLE 160
WD40-rpts __________) (___________________WD 3__________________)(______________________
Query 161 FLPDSFDAGSNQVLGVLSQDGIMRFINMQTCKLLFEIGSLDEGISSSAISPHGRYIASIMENGSLNIYSVQALTQEINKP 240
WD40-rpts WD 4______________________) (_________________WD 5________________)
Query 241 PPPLVKVIEDLPKNKLSSSDLKMKVTSGRVQQPAKSRESKMQTRILKQDLTGDFESKKNELPDGLNKKRLQILLKGYGEY 320
WD40-rpts (______________________WD 6_____________________)
Query 321 PTKYRMFIWRSLLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRTLSALAHWSVIFSDTPYLPLLAFPFV 400
WD40-rpts
Query 401 KLFQNNQLICFEVIATLIINWCQHWFEYFPNPPINILSMIENVLAFHDKELLQHFIDHDITSQLYAWPLLETVFSEVLTR 480
WD40-rpts
Query 481 EEWLKLFDNIFSNHPSFLLMTVVAYNICSRTPLLSCNLKDDFEFFFHHRNNLDINVVIRQVYHLMETTPTDIHPDSMLNV 560
WD40-rpts
Query 561 FVALTKGQYPVFNQYPKFIVDYQTQERERIRNDELDYLRERQLKICKLKSTSKELKMKLGTRNRSCFVKLKKQEEKCSYK 640
WD40-rpts
Query 641 RRRK 644
WD40-rpts
6 WD40-repeats found in QUERY=ENSP00000367320 (Len=644):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 11-48 7.71 433.17 9.0e-05 35.0% 50.21
WD 2: Seg 6 49-91 5.90 358.28 0.00092 22.5% 51.77
WD 3: Seg 10 95-137 5.07 323.91 0.00268 17.5% 55.98
WD 4: Seg 14 138-187 4.25 290.16 0.00763 17.5% 55.05
WD 5: Seg 18 191-229 7.55 426.39 0.00011 22.5% 56.59
WD 6: Seg 24 268-316 3.79 271.02 0.01378 7.5% 22.31
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 11-48 -KE----LVSWMR---GHESS----VFSISVHAS------GKYAITTSSD-TAQLWD----------
WD 2 49-91 LDT----FQRKRKLNIRQSVG----IQKVFFLPL------SNTILSCFKDNSIFAWE----------
WD 3 95-137 -LF----CKYQLP---APPESSSILYKVFAVTRD------GRILAAGGKSNHLHLWC----------
WD 4 138-187 LEARQLFRIIQMP---TKVRA----IRHLEFLPDSFDAGSNQVLGVLSQDGIMRFIN----------
WD 5 191-229 -CK----LLFEIG---SLDEG----ISSSAISPH------GRYIASIMENGSLNIYS----------
WD 6 268-316 -GR----VQQPAK---SRESK----MQTRILKQD------LTGDFESKKNELPDGLNKKRLQILLKG
WD40 Template TGE----CLRTLS---GHTSG----VTSVSFSPD------GKRLVSGSEDGTIKVWD----------