WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000367320    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000367320 (Len=644)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000367320, Len=644):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFLTYMETVTKELVSWMRGHESSVFSISVHASGKYAITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQKVFFLPLSNTILS 80  
WD40-rpts                (________________WD 1________________)(___________________WD 2________

Query       81 CFKDNSIFAWECDTLFCKYQLPAPPESSSILYKVFAVTRDGRILAAGGKSNHLHLWCLEARQLFRIIQMPTKVRAIRHLE 160 
WD40-rpts      __________)   (___________________WD 3__________________)(______________________

Query      161 FLPDSFDAGSNQVLGVLSQDGIMRFINMQTCKLLFEIGSLDEGISSSAISPHGRYIASIMENGSLNIYSVQALTQEINKP 240 
WD40-rpts      WD 4______________________)   (_________________WD 5________________)           

Query      241 PPPLVKVIEDLPKNKLSSSDLKMKVTSGRVQQPAKSRESKMQTRILKQDLTGDFESKKNELPDGLNKKRLQILLKGYGEY 320 
WD40-rpts                                 (______________________WD 6_____________________)    

Query      321 PTKYRMFIWRSLLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRTLSALAHWSVIFSDTPYLPLLAFPFV 400 
WD40-rpts                                                                                      

Query      401 KLFQNNQLICFEVIATLIINWCQHWFEYFPNPPINILSMIENVLAFHDKELLQHFIDHDITSQLYAWPLLETVFSEVLTR 480 
WD40-rpts                                                                                      

Query      481 EEWLKLFDNIFSNHPSFLLMTVVAYNICSRTPLLSCNLKDDFEFFFHHRNNLDINVVIRQVYHLMETTPTDIHPDSMLNV 560 
WD40-rpts                                                                                      

Query      561 FVALTKGQYPVFNQYPKFIVDYQTQERERIRNDELDYLRERQLKICKLKSTSKELKMKLGTRNRSCFVKLKKQEEKCSYK 640 
WD40-rpts                                                                                      

Query      641 RRRK 644 
WD40-rpts          



6 WD40-repeats found in QUERY=ENSP00000367320 (Len=644):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-48       7.71  433.17  9.0e-05       35.0%     50.21
  WD 2:  Seg  6    49-91       5.90  358.28  0.00092       22.5%     51.77
  WD 3:  Seg 10    95-137      5.07  323.91  0.00268       17.5%     55.98
  WD 4:  Seg 14   138-187      4.25  290.16  0.00763       17.5%     55.05
  WD 5:  Seg 18   191-229      7.55  426.39  0.00011       22.5%     56.59
  WD 6:  Seg 24   268-316      3.79  271.02  0.01378        7.5%     22.31
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   11-48     -KE----LVSWMR---GHESS----VFSISVHAS------GKYAITTSSD-TAQLWD----------
   WD 2   49-91     LDT----FQRKRKLNIRQSVG----IQKVFFLPL------SNTILSCFKDNSIFAWE----------
   WD 3   95-137    -LF----CKYQLP---APPESSSILYKVFAVTRD------GRILAAGGKSNHLHLWC----------
   WD 4  138-187    LEARQLFRIIQMP---TKVRA----IRHLEFLPDSFDAGSNQVLGVLSQDGIMRFIN----------
   WD 5  191-229    -CK----LLFEIG---SLDEG----ISSSAISPH------GRYIASIMENGSLNIYS----------
   WD 6  268-316    -GR----VQQPAK---SRESK----MQTRILKQD------LTGDFESKKNELPDGLNKKRLQILLKG

   WD40 Template    TGE----CLRTLS---GHTSG----VTSVSFSPD------GKRLVSGSEDGTIKVWD----------


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Last modified: 09 Jan 2019