Input parameters:
Query = ENSP00000367571 (Len=304)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000367571, Len=304):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNFSEVFKLSSLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADSLFILCAMYKRGLVQVWSLEQ 80
WD40-rpts (_______________WD 1______________)(__________________WD 2__________________)
Query 81 PEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACLQGITFTRDGRYMALAERRDCKDYV 160
WD40-rpts (_________________WD 3_________________) (__________________WD 4_______________
Query 161 SIFVCSDWQLLRHFDTDTQDLTGIEWAPNGCVLAVWDTCLEVRILNHVTWKMITEFGHPAAINDPKIVVYKEAEKSPQLG 240
WD40-rpts ___) (_________________WD 5________________) (__________________
Query 241 LGCLSFPPPRAGAGPLPSSESKYEIASVPVSLQTLKPVTDRANPKIGIGMLAFSPDSYFLATRN 304
WD40-rpts _WD 6___________________)
6 WD40-repeats found in QUERY=ENSP00000367571 (Len=304):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-35 5.98 361.87 0.00083 25.0% 37.59
WD 2: Seg 4 36-77 6.74 393.14 0.00031 15.0% 55.09
WD 3: Seg 8 81-120 7.27 414.82 0.00016 22.5% 54.79
WD 4: Seg 12 123-164 6.50 383.14 0.00043 7.5% 54.69
WD 5: Seg 16 168-206 8.78 477.31 2.3e-05 17.5% 55.59
WD 6: Seg 21 222-265 4.62 305.43 0.00476 12.5% 39.43
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-35 ---------MNFSEVFKLSSLLCKFSPDGKYLAS-CVQY-RL---V-VRD
WD 2 36-77 VNTL----QILQLYTCLDQIQHIEWSADSLFILC-AMYKRGL---VQVWS
WD 3 81-120 -PEW-----HCKIDEGSAGLVASCWSPDGRHILNTTEFH-LR---ITVWS
WD 4 123-164 -TKS-----VSYIKYPKACLQGITFTRDGRYMAL-AERR-DCKDYVSIFV
WD 5 168-206 -WQL-----LRHFDTDTQDLTGIEWAPNGCVLAV-WDTC-LE---VRILN
WD 6 222-265 INDPKIVVYKEAEKSPQLGLGCLSFPPPRA-GAG-PLPS-SE---SKYEI
WD40 Template TGEC-----LRTLSGHTSGVTSVSFSPDGKRLVS-GSED-GT---IKVWD