WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000367571    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000367571 (Len=304)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000367571, Len=304):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFSEVFKLSSLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADSLFILCAMYKRGLVQVWSLEQ 80  
WD40-rpts      (_______________WD 1______________)(__________________WD 2__________________)   

Query       81 PEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACLQGITFTRDGRYMALAERRDCKDYV 160 
WD40-rpts      (_________________WD 3_________________)  (__________________WD 4_______________

Query      161 SIFVCSDWQLLRHFDTDTQDLTGIEWAPNGCVLAVWDTCLEVRILNHVTWKMITEFGHPAAINDPKIVVYKEAEKSPQLG 240 
WD40-rpts      ___)   (_________________WD 5________________)               (__________________

Query      241 LGCLSFPPPRAGAGPLPSSESKYEIASVPVSLQTLKPVTDRANPKIGIGMLAFSPDSYFLATRN 304 
WD40-rpts      _WD 6___________________)                                       



6 WD40-repeats found in QUERY=ENSP00000367571 (Len=304):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       5.98  361.87  0.00083       25.0%     37.59
  WD 2:  Seg  4    36-77       6.74  393.14  0.00031       15.0%     55.09
  WD 3:  Seg  8    81-120      7.27  414.82  0.00016       22.5%     54.79
  WD 4:  Seg 12   123-164      6.50  383.14  0.00043        7.5%     54.69
  WD 5:  Seg 16   168-206      8.78  477.31  2.3e-05       17.5%     55.59
  WD 6:  Seg 21   222-265      4.62  305.43  0.00476       12.5%     39.43
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-35     ---------MNFSEVFKLSSLLCKFSPDGKYLAS-CVQY-RL---V-VRD
   WD 2   36-77     VNTL----QILQLYTCLDQIQHIEWSADSLFILC-AMYKRGL---VQVWS
   WD 3   81-120    -PEW-----HCKIDEGSAGLVASCWSPDGRHILNTTEFH-LR---ITVWS
   WD 4  123-164    -TKS-----VSYIKYPKACLQGITFTRDGRYMAL-AERR-DCKDYVSIFV
   WD 5  168-206    -WQL-----LRHFDTDTQDLTGIEWAPNGCVLAV-WDTC-LE---VRILN
   WD 6  222-265    INDPKIVVYKEAEKSPQLGLGCLSFPPPRA-GAG-PLPS-SE---SKYEI

   WD40 Template    TGEC-----LRTLSGHTSGVTSVSFSPDGKRLVS-GSED-GT---IKVWD


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Last modified: 09 Jan 2019