WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000369136 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000369136 (Len=1432) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000369136, Len=1432): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQRGKPCRALPTLKCQTFCQRHGLMFEVVDLRWGIRNIEATDHLTTELCLEEVDRCWKTSIGPAFVALIGDQYGPCLIPS 80
WD40-rpts
Query 81 RIDEKEWEVLRDHLTARPSDLELVARYFQRDENAFPPTYVLQAPGTGEACEPEEATLTSVLRSGAQEARRLGLITQEQWQ 160
WD40-rpts
Query 161 HYHRSVIEWEIERSLLSSEDREQGATVFLREIQDLHKHILEDCALRMVDRLADGCLDADAQNLLSSLKSHITDMHPGVLK 240
WD40-rpts
Query 241 THRLPWSRDLVNPKNKTHACYLKELGEQFVVRANHQVLTRLRELDTAGQELAWLYQEIRHHLWQSSEVIQTFCGRQELLA 320
WD40-rpts
Query 321 RLGQQLRHDDSKQHTPLVLFGPPGIGKTALMCKLAEQMPRLLGHKTVTVLRLLGTSQMSSDARGLLKSICFQVCLAYGLP 400
WD40-rpts
Query 401 LPPAQVLDAHTRVVQFFHTLLHTVSCRNFESLVLLLDAMDDLDSVRHARRVPWLPLNCPPRVHLILSACSGALGVLDTLQ 480
WD40-rpts
Query 481 RVLLDPEAYWEVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPECGNPGRLRLAFEEARKWASFTVPVPLATTAE 560
WD40-rpts
Query 561 EATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWTPPSKELLRFPPLLWVRLRRDLGY 640
WD40-rpts
Query 641 YLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKRHGVLADFFSGTWSQGTKKLITLPLVGKPLNLDRKVAPQPLWFS 720
WD40-rpts
Query 721 HTVANLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCAPHLDSPEVGLVREALQLCRPAVEL 800
WD40-rpts
Query 801 RGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHKGITAMAWGVEE 880
WD40-rpts (_________________WD 1_
Query 881 KLLVIGTQDGIMAVWDMEEQHVIHMLTGHTGEVRCVKIFAKGTLANSASKDYTLHLWNLLSGQEKFTIWDGGSKNPAEPQ 960
WD40-rpts _______________) (_________________WD 2________________) (___________
Query 961 IWNLHVDEAHKVVYSASGSKINAWNLETAEPVFHILGDASDPWMCMAVLASQATLLTVSRDGVVSLWSSATGKLQGKQHM 1040
WD40-rpts _____WD 3_______________) (_________________WD 4_________________) (____
Query 1041 SSIKEETPTCAVSVQKQGKLVTGFSNGSISLVSSKGDRLLEKLPDAVRFLVVSEDESLLAAGFGRSVRIFLADSRGFRRF 1120
WD40-rpts ____________WD 5________________)(________________WD 6________________) (__
Query 1121 MAMDLEHEDMVETAVFGTENNLIITGSLDALIQVWSLSEQGTLLDILEGVGAPVSLLARGGALVASASPQSSSFKVWDLS 1200
WD40-rpts _______________WD 7________________) (________________WD 8________________)
Query 1201 DAHRSRVPAPFLDRTGLTAVSHNGSYVYFPKIGDKNKVTIWDLAEGEEQDSLDTSSEIRCLEVAEQRKLLFTGLVSGVVL 1280
WD40-rpts (__________________WD 9_________________) (________________WD10______________
Query 1281 VFPLNSRQDVICIPPPEARKAINCMSLSKCEDRLAIAYDNIVLVLDITSGDPCPVIDGPRYTFYTQLPETLSSVAILTDY 1360
WD40-rpts __) (_________________WD11_________________) (_________________WD12__
Query 1361 RVVYSMTNGDLFLYECATSKAFPLETHRSRVACVEVSHKEQLVVSGSEDALLCLWDLQARKWKFEMSYTAPC 1432
WD40-rpts ______________) (_________________WD13________________)
 13 WD40-repeats found in QUERY=ENSP00000369136 (Len=1432): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 11 858-896 8.47 464.41 3.4e-05 40.0% 56.03 WD 2: Seg 15 900-938 8.62 470.67 2.8e-05 30.0% 57.82 WD 3: Seg 20 949-985 4.72 309.72 0.00416 12.5% 33.64 WD 4: Seg 23 989-1028 6.57 385.93 0.00039 20.0% 57.08 WD 5: Seg 27 1036-1073 5.79 353.81 0.00106 25.0% 49.83 WD 6: Seg 31 1074-1111 5.62 346.75 0.00132 17.5% 44.58 WD 7: Seg 34 1118-1156 7.70 432.80 9.1e-05 22.5% 51.94 WD 8: Seg 38 1161-1198 4.95 319.05 0.00312 30.0% 50.13 WD 9: Seg 42 1202-1242 6.21 371.33 0.00062 12.5% 47.66 WD10: Seg 46 1246-1283 6.26 373.17 0.00058 22.5% 56.33 WD11: Seg 50 1287-1326 4.45 298.37 0.00592 17.5% 51.57 WD12: Seg 55 1337-1375 6.38 378.22 0.00050 15.0% 45.57 WD13: Seg 58 1378-1416 8.38 460.83 3.8e-05 35.0% 55.18Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 858-896 -GPLRATLSGC--HKG-ITAMAWGVEEKLL--VIGT-QDGIMAVWD WD 2 900-938 -QHVIHMLTGH--TGE-VRCVKIFAKGTLA--NSAS-KDYTLHLWN WD 3 949-985 --WDGGSKNPA--EPQ-IWNLHVDEAHKVV--YSAS--GSKINAWN WD 4 989-1028 -AEPVFHILGD--ASDPWMCMAVLASQATL--LTVS-RDGVVSLWS WD 5 1036-1073 -GKQHMSSIKE--ETP-TCAVSVQKQGK-L--VTGF-SNGSISLVS WD 6 1074-1111 -SKGDRLLEKL--PDA-VRFLVVSEDESLL--AAGF--GRSVRIFL WD 7 1118-1156 -RRFMAMDLEH--EDM-VETAVFGTENNLI--ITGS-LDALIQVWS WD 8 1161-1198 -GTLLDILEGV--GAP-VSL--LARGGALV--ASASPQSSSFKVWD WD 9 1202-1242 -AHRSRVPAPF--LDR-TGLTAVSHNGSYVYFPKIG-DKNKVTIWD WD10 1246-1283 -GEEQDSLDTS---SE-IRCLEVAEQRKLL--FTGL-VSGVVLVFP WD11 1287-1326 -RQDVICIPPPEARKA-INCMSLSKCEDRL--AIAY--DNIVLVLD WD12 1337-1375 DGPRYTFYTQL--PET-LSSVAILTDYRVV--YSMT--NGDLFLYE WD13 1378-1416 -TSKAFPLETH--RSR-VACVEVSHKEQLV--VSGS-EDALLCLWD WD40 Template TGECLRTLSGH--TSG-VTSVSFSPDGKRL--VSGS-EDGTIKVWD |
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