WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000374239 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000374239 (Len=1666) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000374239, Len=1666): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAQGRERDEGPHSAGGASLSVRWVQGFPKQNVHFVNDNTICYPCGNYVIFINIETKKKTVLQCSNGIVGVMATNIPCEVV 80
WD40-rpts (__________________WD 1___
Query 81 AFSDRKLKPLIYVYSFPGLTRRTKLKGNILLDYTLLSFSYCGTYLASYSSLPEFELALWNWESSIILCKKSQPGMDVNQM 160
WD40-rpts ______________) (__________________WD 2__________________) (________________
Query 161 SFNPMNWRQLCLSSPSTVSVWTIERSNQEHCFRARSVKLPLEDGSFFNETDVVFPQSLPKDLIYGPVLPLSAIAGLVGKE 240
WD40-rpts _WD 3________________) (_______
Query 241 AETFRPKDDLYPLLHPTMHCWTPTSDLYIGCEEGHLLMINGDTLQVTVLNKIEEESPLEDRRNFISPVTLVYQKEGVLAS 320
WD40-rpts ______________WD 4_____________________) (_________________WD 5_______
Query 321 GIDGFVYSFIIKDRSYMIEDFLEIERPVEHMTFSPNYTVLLIQTDKGSVYIYTFGKEPTLNKVLDACDGKFQAIDFITPG 400
WD40-rpts _________) (________________WD 6_______________)(___________________WD 7___
Query 401 TQYFMTLTYSGEICVWWLEDCACVSKIYLNTLATVLACCPSSLSAAVGTEDGSVYFISVYDKESPQVVHKAFLSESSVQH 480
WD40-rpts ________________)(__________________WD 8_________________) (___________________
Query 481 VVYDQQGIFLLVGTAEGKVFIINANSSSSFQIIGFTEVAKDILQISTVSLLETDIVEVMVLSSLPEAGRSRLEMFTLPTL 560
WD40-rpts WD 9__________________)
Query 561 LPQVSTTFADERGRLKDEIIHKYLYELEHALSSAVLGFQSNQIYGFCSQVPYICSYLLPEEEHTGIYILKPYKKVQSRQY 640
WD40-rpts (___________
Query 641 GPGLLYLSSHGLWLITIAKCGILCIRDVYTLETFAWCRSHSHQGHGIQSMRISMDGQNILVNGRDDGTLVYLKWKRFGGH 720
WD40-rpts ______WD10________________) (__________________WD11__________________)
Query 721 LASEILDYYQKLLISLSSAMDKENHYLSTTPKVSVDLGSDSEHTKQKASTDLSQDELVLTDVKKEIPWIQQKSQEAIKKE 800
WD40-rpts
Query 801 VNLFSKKRKEIKQGIKSLSKTILNMMEENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKMIKDVEMHNLAKSYLAE 880
WD40-rpts
Query 881 LIKEECWNSMAVKGRALKCFHIPCVVENFPMKARTVEELKELERVLQQKKIEAECLKLRKEIVEAQSGVKLIKQRHEEDD 960
WD40-rpts
Query 961 EEEEEEDKTVKYSNLPNYLLGSLSTDFGVDTSLLSSQLELHSREEKINQIILLKDIIYKVKTVFNNEFDAAYKQKEFEIA 1040
WD40-rpts
Query 1041 RVKERNVRIREIILDLELEEAVWQPEFEDCEKPERTLVVQDEEITAHKHIKPWHKAKELIVNHEKEHWLLIQDASTRLRA 1120
WD40-rpts
Query 1121 LMDMMGGVLEVKKEDILRMVIPQPAFMAKPDAVWTEEERKQFKDYEKKVKELNEERDKYRKSLEAELKKLQNSIQESTQA 1200
WD40-rpts
Query 1201 FDEHLKRLFERRVKAEMVTNQEELKISNLAFSLLLDEELSSREKFLNNYLTRKQHEKSQTSEAVRKSREDLDVCKEHYDN 1280
WD40-rpts
Query 1281 LLAEDKVMDRSFKKEFSEIPGHQVDILYKLFKRRPRISKQKTHSETTSVVPFGELPGSGKLNKDAFAQLMKAMDELDNIS 1360
WD40-rpts
Query 1361 NMPEGLDPLVWNHFCMTRRAKVENEQKVKQKAADLLEMATFLQKRVEEEEKVQQEIERVFHELILLQEEKVRFQLNLTIQ 1440
WD40-rpts
Query 1441 ILLKQGQVELENFQLVLEYSDAILINKNIIEDLNSVIRTQGQKKVASMMESKDVHKRILQIEWEHKKMEMEREDLNQKAW 1520
WD40-rpts
Query 1521 DIQMLFFSRDRQKYLNEPNYEALISIQIGIMEQTIAVLDKMHKKNVENCKKLLKKLGKFSNQKDIANYALSCNLREELVA 1600
WD40-rpts
Query 1601 VSERKDICNAMGSKLTCEKIVKERYENMMQQQKLTNISKQQAEQISILQTEVERLRMKTFPALVQM 1666
WD40-rpts
 11 WD40-repeats found in QUERY=ENSP00000374239 (Len=1666): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 55-95 3.87 274.38 0.01243 12.5% 53.46 WD 2: Seg 9 99-140 4.20 288.04 0.00815 27.5% 52.16 WD 3: Seg 13 144-182 6.68 390.73 0.00034 27.5% 54.96 WD 4: Seg 18 233-280 3.01 239.07 0.03673 15.0% 26.97 WD 5: Seg 22 292-330 6.03 363.58 0.00078 12.5% 34.34 WD 6: Seg 25 337-373 5.35 335.54 0.00187 15.0% 46.87 WD 7: Seg 28 374-417 5.44 339.50 0.00165 20.0% 46.48 WD 8: Seg 31 418-458 5.52 342.47 0.00151 17.5% 51.79 WD 9: Seg 35 461-503 7.14 409.77 0.00019 20.0% 56.21 WD10: Seg 45 629-667 5.47 340.52 0.00160 15.0% 41.20 WD11: Seg 48 671-712 3.92 276.41 0.01167 22.5% 42.20Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 55-95 TKK----K---------TVLQ-CSN---G-IVGVMAT-NIPCEVVAFSDRKL--KPLIYVYS WD 2 99-140 -LT---RR---------TKLK-GNI---LLDYTLLSF-SYCGTYLASY--SSLPEFELALWN WD 3 144-182 -SI---IL---------CKKS-QPG---M-DVNQMSF-NPMNWRQLCL--SS--PSTVSVWT WD 4 233-280 IAG---LVGKEAETFRPKDDL-YPL---L-HPTMHCW-TPTSD-LYIG--CE--EGHLLMIN WD 5 292-330 -IE---EE---------SPLE-DRR---N-FISPVTL-VYQKEGVLAS--GI--DGFVYSFI WD 6 337-373 ---------------MIEDFL-EIE---R-PVEHMTF-SPNYTVLLIQ--TD--KGSVYIYT WD 7 374-417 FGKEPTLN---------KVLD-ACD---G-KFQAIDFITPGTQYFMTL--TY--SGEICVWW WD 8 418-458 LED---CA---------CVSKIYLN---T-LATVLAC-CPSSLSAAVG--TE--DGSVYFIS WD 9 461-503 DKESPQVV---------HKAF-LSE---S-SVQHVVY-DQQGIFLLVG--TA--EGKVFIIN WD10 629-667 -LK---PY---------KKVQ-SRQ---Y-GPGLLYL-SSHGLWLITI--AK--CGILCIRD WD11 671-712 -LE---TF---------AWCR-SHSHQGH-GIQSMRI-SMDGQNILVN--GR--DDGTLVYL WD40 Template TGE---CL---------RTLS-GHT---S-GVTSVSF-SPDGKRLVSG--SE--DGTIKVWD |
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