WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000379242 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000379242 (Len=752) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000379242, Len=752): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MENLESRLKNAPYFRCEKGTDSIPLCRKCETRVLAWKIFSTKEWFCRINDISQRRFLVGILKQLNSLYLLHYFQNILQTT 80
WD40-rpts
Query 81 QGKDFIYNRSRIDLSKKEGKVVKSSLNQMLDKTVEQKMKEILYWFANSTQWTKANYTLLLLQMCNPKLLLTAANVIRVLF 160
WD40-rpts
Query 161 LREENNISGLNQDITDVCFSPEKDHSSKSATSQVYWTAKTQHTSLPLSKAPENEHFLGAASNPEEPWRNSLRCISEMNRL 240
WD40-rpts
Query 241 FSGKADITKPGYDPCNLLVDLDDIRDLSSGFSKYRDFIRYLPIHLSKYILRMLDRHTLNKCASVSQHWAAMAQQVKMDLS 320
WD40-rpts (______
Query 321 AHGFIQNQITFLQGSYTRGIDPNYANKVSIPVPKMVDDGKSMRVKHPKWKLRTKNEYNLWTAYQNEETQQVLMEERNVFC 400
WD40-rpts __________WD 1________________) (_________________WD 2________________) (_____
Query 401 GTYNVRILSDTWDQNRVIHYSGGDLIAVSSNRKIHLLDIIQVKAIPVEFRGHAGSVRALFLCEEENFLLSGSYDLSIRYW 480
WD40-rpts ______________WD 3___________________)(___________________WD 4__________________
Query 481 DLKSGVCTRIFGGHQGTITCMDLCKNRLVSGGRDCQVKVWDVDTGKCLKTFRHKDPILATRINDTYIVSSCERGLVKVWH 560
WD40-rpts ) (________________WD 5_______________) (_______________WD 6_______________)
Query 561 IAMAQLVKTLSGHEGAVKCLFFDQWHLLSGSTDGLVMAWSMVGKYERCLMAFKHPKEVLDVSLLFLRVISACADGKIRIY 640
WD40-rpts (________________WD 7_______________) (_________________WD 8________________
Query 641 NFFNGNCMKVIKANGRGDPVLSFFIQGNRISVCHISTFAKRINVGWNGIEPSATAQGGNASLTECAHVRLHIAGHLPASR 720
WD40-rpts ) (_________________WD 9________________)(____________________WD10____________
Query 721 LPVAAVQPMTGGMAPTTAPTHVLAMLILFSGV 752
WD40-rpts _______)
 10 WD40-repeats found in QUERY=ENSP00000379242 (Len=752): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 6 314-351 4.53 301.70 0.00534 10.0% 10.44 WD 2: Seg 7 355-393 2.98 237.78 0.03820 5.0% 19.67 WD 3: Seg 9 395-438 5.06 323.58 0.00271 12.5% 50.99 WD 4: Seg 13 439-481 8.51 466.21 3.2e-05 27.5% 53.81 WD 5: Seg 17 485-521 8.24 454.90 4.6e-05 37.5% 49.24 WD 6: Seg 21 525-560 5.89 357.82 0.00094 30.0% 48.39 WD 7: Seg 25 564-600 7.84 438.35 7.7e-05 37.5% 54.68 WD 8: Seg 29 603-641 8.24 455.02 4.6e-05 22.5% 52.61 WD 9: Seg 33 645-683 8.41 461.99 3.7e-05 20.0% 54.82 WD10: Seg 37 684-728 5.36 336.00 0.00184 12.5% 27.46Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 314-351 -------Q---VK----MDLSAHGFIQNQITFLQGSYTRGIDPNYANKVSIP WD 2 355-393 -M-----V---DD----GKSMRVKHPKWKLRTKNEYNLWTAYQNEETQQVLM WD 3 395-438 ER-----N---VFCGTYNVRILSDTWDQNRVIHYSGGDLIAVSSNRKIHLLD WD 4 439-481 II-----QVKAIP----VEFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWD WD 5 485-521 -G-----V---CT----RIFGGHQGTITCMDLCKNR--LVSGGRDCQVKVWD WD 6 525-560 -G-----K---CL----KTF-RHKDPILAT--RINDTYIVSSCERGLVKVWH WD 7 564-600 -A-----Q---LV----KTLSGHEGAVKCLFF--DQWHLLSGSTDGLVMAWS WD 8 603-641 -G-----K---YE----RCLMAFKHPKEVLDVSLLFLRVISACADGKIRIYN WD 9 645-683 -G-----N---CM----KVIKANGRGDPVLSFFIQGNRISVCHISTFAKRIN WD10 684-728 VGWNGIEP---SA----TAQGGNASLTECAHVRLHIAGHLPASRLPVAAVQP WD40 Template TG-----E---CL----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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